CSPI04G02650 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G02650
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 1612326 .. 1612541 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTCAGAATCAACAGTCCAAGCACTCGGAAATGGTATCGGAAGTCGATCGGCAAGAAAATTGGCGACGTGGTTGGTTGTAAATCAGAAAAAAATGGCGGTGGCGGAGTACCGGAAAGAGCCGGGAAGGGAATTTACCGGCTCCTTGCAGGCGTAAAAGCGAGGAGTAGGTACTGGAGAGAGTGGGGAAGGGGAAAATGGAGAAAAAAATAA

mRNA sequence

ATGAGGTTCAGAATCAACAGTCCAAGCACTCGGAAATGGTATCGGAAGTCGATCGGCAAGAAAATTGGCGACGTGGTTGGTTGTAAATCAGAAAAAAATGGCGGTGGCGGAGTACCGGAAAGAGCCGGGAAGGGAATTTACCGGCTCCTTGCAGGCGTAAAAGCGAGGAGTAGGTACTGGAGAGAGTGGGGAAGGGGAAAATGGAGAAAAAAATAA

Coding sequence (CDS)

ATGAGGTTCAGAATCAACAGTCCAAGCACTCGGAAATGGTATCGGAAGTCGATCGGCAAGAAAATTGGCGACGTGGTTGGTTGTAAATCAGAAAAAAATGGCGGTGGCGGAGTACCGGAAAGAGCCGGGAAGGGAATTTACCGGCTCCTTGCAGGCGTAAAAGCGAGGAGTAGGTACTGGAGAGAGTGGGGAAGGGGAAAATGGAGAAAAAAATAA

Homology

[Close]

BLAST of CSPI04G02650 vs. TrEMBL
Match: A0A0A0KU19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G010970 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-33
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNGGGGVPERAGKGIYRLLAGVKARSRYW 60
          MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKN GGGVPERAGKGIYRLLAGVKARSRYW
Sbjct: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNSGGGVPERAGKGIYRLLAGVKARSRYW 60

Query: 61 REWGRGKWRKK 72
          REWGRGKWRKK
Sbjct: 61 REWGRGKWRKK 71

[Close]

BLAST of CSPI04G02650 vs. NCBI nr
Match: gi|700197840|gb|KGN52998.1| (hypothetical protein Csa_4G010970 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNGGGGVPERAGKGIYRLLAGVKARSRYW 60
          MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKN GGGVPERAGKGIYRLLAGVKARSRYW
Sbjct: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNSGGGVPERAGKGIYRLLAGVKARSRYW 60

Query: 61 REWGRGKWRKK 72
          REWGRGKWRKK
Sbjct: 61 REWGRGKWRKK 71

The following BLAST results are available for this feature:

BLAST of CSPI04G02650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G02650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU19_CUCSA	2.1e-33	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G010970 PE=4 SV=1	[more]

BLAST of CSPI04G02650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G02650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197840\|gb\|KGN52998.1\|	3.1e-33	98.59	hypothetical protein Csa_4G010970 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G02650.1	CSPI04G02650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G02650	Csa4G010970	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G02650	CsaV3_4G002580	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G02650	CsGy4G002520	Cucumber (Gy14) v2	cgybcpiB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G02650	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G02650	Silver-seed gourd	carcpiB0133
CSPI04G02650	Silver-seed gourd	carcpiB0730
CSPI04G02650	Watermelon (97103) v2	cpiwmbB333
CSPI04G02650	Wax gourd	cpiwgoB381
CSPI04G02650	Cucurbita moschata (Rifu)	cmocpiB250
CSPI04G02650	Cucumber (Gy14) v1	cgycpiB103
CSPI04G02650	Cucurbita maxima (Rimu)	cmacpiB263
CSPI04G02650	Cucurbita maxima (Rimu)	cmacpiB850
CSPI04G02650	Cucurbita moschata (Rifu)	cmocpiB833
CSPI04G02650	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G02650	Watermelon (Charleston Gray)	cpiwcgB343
CSPI04G02650	Watermelon (97103) v1	cpiwmB307
CSPI04G02650	Cucurbita pepo (Zucchini)	cpecpiB617
CSPI04G02650	Cucurbita pepo (Zucchini)	cpecpiB871
CSPI04G02650	Bottle gourd (USVL1VR-Ls)	cpilsiB311