CSPI04G02650.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G02650.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 1612326 .. 1612541 (+)
Sequence length	216

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTCAGAATCAACAGTCCAAGCACTCGGAAATGGTATCGGAAGTCGATCGGCAAGAAAATTGGCGACGTGGTTGGTTGTAAATCAGAAAAAAATGGCGGTGGCGGAGTACCGGAAAGAGCCGGGAAGGGAATTTACCGGCTCCTTGCAGGCGTAAAAGCGAGGAGTAGGTACTGGAGAGAGTGGGGAAGGGGAAAATGGAGAAAAAAATAA

mRNA sequence

ATGAGGTTCAGAATCAACAGTCCAAGCACTCGGAAATGGTATCGGAAGTCGATCGGCAAGAAAATTGGCGACGTGGTTGGTTGTAAATCAGAAAAAAATGGCGGTGGCGGAGTACCGGAAAGAGCCGGGAAGGGAATTTACCGGCTCCTTGCAGGCGTAAAAGCGAGGAGTAGGTACTGGAGAGAGTGGGGAAGGGGAAAATGGAGAAAAAAATAA

Coding sequence (CDS)

ATGAGGTTCAGAATCAACAGTCCAAGCACTCGGAAATGGTATCGGAAGTCGATCGGCAAGAAAATTGGCGACGTGGTTGGTTGTAAATCAGAAAAAAATGGCGGTGGCGGAGTACCGGAAAGAGCCGGGAAGGGAATTTACCGGCTCCTTGCAGGCGTAAAAGCGAGGAGTAGGTACTGGAGAGAGTGGGGAAGGGGAAAATGGAGAAAAAAATAA

Homology

[Close]

BLAST of CSPI04G02650.1 vs. TrEMBL
Match: A0A0A0KU19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G010970 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-33
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNGGGGVPERAGKGIYRLLAGVKARSRYW 60
          MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKN GGGVPERAGKGIYRLLAGVKARSRYW
Sbjct: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNSGGGVPERAGKGIYRLLAGVKARSRYW 60

Query: 61 REWGRGKWRKK 72
          REWGRGKWRKK
Sbjct: 61 REWGRGKWRKK 71

[Close]

BLAST of CSPI04G02650.1 vs. NCBI nr
Match: gi|700197840|gb|KGN52998.1| (hypothetical protein Csa_4G010970 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNGGGGVPERAGKGIYRLLAGVKARSRYW 60
          MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKN GGGVPERAGKGIYRLLAGVKARSRYW
Sbjct: 1  MRFRINSPSTRKWYRKSIGKKIGDVVGCKSEKNSGGGVPERAGKGIYRLLAGVKARSRYW 60

Query: 61 REWGRGKWRKK 72
          REWGRGKWRKK
Sbjct: 61 REWGRGKWRKK 71

The following BLAST results are available for this feature:

BLAST of CSPI04G02650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G02650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU19_CUCSA	2.1e-33	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G010970 PE=4 SV=1	[more]

BLAST of CSPI04G02650.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G02650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197840\|gb\|KGN52998.1\|	3.1e-33	98.59	hypothetical protein Csa_4G010970 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G02650	CSPI04G02650	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G02650.1	CSPI04G02650.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G02650.1.cds1	CSPI04G02650.1.cds1	CDS