CSPI03G28920 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G28920
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAbhydrolase domain containing, putative
LocationChr3 : 26466290 .. 26466925 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCGATTTCCCAATTCTCATCTCTCACAAAAATCACAATTCTCTCTAAACCTCAGCTTCAATGTCTTCTCCTTCTTTCTCTCAATCCTTCGACATCTTATCTTCTCCCTCTCCATTTCAATACTCAAAACAGGGTTTAACCTCAGTTTCATACTCTGCAACTTGTCACCAAGCAGCATTTGGATTGACACAGACACAAGAATGCAATTCCAGACATCAAAACAAACAAACCCAAAAAAAGCCCTGTGCTATTCTAGTCCATTGCTTCGGTGGGAACTCCAAATCCAAATGGCAATTCTTTTCCCAAGTTAGAGACTTGTCAAGATGCTTCAGTTTGTACTTACCCAGCACCAACAAAACCAACATGTCGGATGTGTTCCTAGCGATTTGTGTAGGCGAAGGAATAAAAAGATTGGGTGTGGAGAAGCATAGCGTAGTGGGGAAAGGGGATCAACTATGGAGGATACGTGGCATACCGGATGGCTGAGATTTACAAGTGATGATCAAATGGTAGAGCAGCTTACGAAGACAGGAAGGGATATAGTGGATCTTGTACTAGAAACACCACAGCATTTGAAGTTGATTCAAACATATTCACAAAGTTGTTAATATATAAGCATGATCCAAGTTTGTTG

mRNA sequence

ATGTCTTCTCCTTCTTTCTCTCAATCCTTCGACATCTTATCTTCTCCCTCTCCATTTCAATACTCAAAACAGGGTTTAACCTCAGTTTCATACTCTGCAACTTGTCACCAAGCAGCATTTGGATTGACACAGACACAAGAATGCAATTCCAGACATCAAAACAAACAAACCCAAAAAAAGCCCTGTGCTATTCTAGTCCATTGCTTCGGTGGGAACTCCAAATCCAAATGGCAATTCTTTTCCCAAGTTAGAGACTTGTCAAGATGCTTCAGTTTGTACTTACCCAGCACCAACAAAACCAACATGTCGGATGTGTTCCTAGCGATTTGTGTAGGCGAAGGAATAAAAAGATTGGGTGTGGAGAAGCATAGCGTAGTGGGGAAAGGGGATCAACTATGGAGGATACGTGGCATACCGGATGGCTGA

Coding sequence (CDS)

ATGTCTTCTCCTTCTTTCTCTCAATCCTTCGACATCTTATCTTCTCCCTCTCCATTTCAATACTCAAAACAGGGTTTAACCTCAGTTTCATACTCTGCAACTTGTCACCAAGCAGCATTTGGATTGACACAGACACAAGAATGCAATTCCAGACATCAAAACAAACAAACCCAAAAAAAGCCCTGTGCTATTCTAGTCCATTGCTTCGGTGGGAACTCCAAATCCAAATGGCAATTCTTTTCCCAAGTTAGAGACTTGTCAAGATGCTTCAGTTTGTACTTACCCAGCACCAACAAAACCAACATGTCGGATGTGTTCCTAGCGATTTGTGTAGGCGAAGGAATAAAAAGATTGGGTGTGGAGAAGCATAGCGTAGTGGGGAAAGGGGATCAACTATGGAGGATACGTGGCATACCGGATGGCTGA
Homology
[Close]
BLAST of CSPI03G28920 vs. TrEMBL
Match: B9S5Q5_RICCO (Abhydrolase domain containing, putative OS=Ricinus communis GN=RCOM_0652430 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 113
           N++   +P  +L+H +GGNS+  WQF +QVR LS+ F+LY+P         TN+T+ SD+
Sbjct: 71  NRRQFNRPNLVLIHGYGGNSR--WQFLNQVRPLSKSFNLYIPDLLFFGDSYTNRTDRSDI 130

Query: 114 FLAICVGEGIKRLGVEKHSVVG 128
           F A C  EG+K+LGVEK++VVG
Sbjct: 131 FQAKCASEGLKKLGVEKYNVVG 150

[Close]
BLAST of CSPI03G28920 vs. TrEMBL
Match: M5WXW7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018297mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 113
           N +   KP  +++H +GGNSK  WQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 73  NSRRSNKPALVMLHGYGGNSK--WQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 132

Query: 114 FLAICVGEGIKRLGVEKHSV 126
           F A CV EG+KRLGVE+ +V
Sbjct: 133 FQAKCVAEGLKRLGVERFAV 150

[Close]
BLAST of CSPI03G28920 vs. TrEMBL
Match: A0A103YB46_CYNCS (Alpha/beta hydrolase fold-1 OS=Cynara cardunculus var. scolymus GN=Ccrd_015805 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-09
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 60  KPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDVFLAICV 119
           KP  +LVH +GGNSK  WQF  QV  L+R F++Y+P         + +T  +D F A CV
Sbjct: 98  KPNLVLVHGYGGNSK--WQFVLQVAQLTRDFNVYIPDLVFFGKSYSTRTERTDTFQAKCV 157

Query: 120 GEGIKRLGVEKHSVVG 128
            +G+K+LGVEK SV G
Sbjct: 158 CDGMKKLGVEKFSVYG 171

[Close]
BLAST of CSPI03G28920 vs. TrEMBL
Match: A0A068TND9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021774001 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-09
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 60  KPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDVFLAICV 119
           KP  +LVH FGGNSK  +QF  Q+  L+R F+LY+P         T   + +D F A C+
Sbjct: 82  KPNLVLVHGFGGNSK--FQFLFQIGTLARSFNLYIPDLLFFGKSYTRNPDRTDAFQARCL 141

Query: 120 GEGIKRLGVEKHSVVG 128
           GEG++RLGV+++S+ G
Sbjct: 142 GEGLRRLGVDRYSIYG 155

[Close]
BLAST of CSPI03G28920 vs. TrEMBL
Match: A0A059AHN6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02811 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-09
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 59  KKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDVFLAIC 118
           KKP  +L+H +GGNSK   QF++QV  LS+ F+L++P         T     SDVF AIC
Sbjct: 83  KKPYLVLIHGYGGNSKG--QFWTQVGPLSQNFNLFIPDLLFFGKSHTLSPQRSDVFQAIC 142

Query: 119 VGEGIKRLGVEKHSV 126
           + EG+K+LGV+K+S+
Sbjct: 143 IVEGLKKLGVDKYSI 155

[Close]
BLAST of CSPI03G28920 vs. TAIR10
Match: AT5G21950.1 (AT5G21950.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 30/82 (36.59%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLP--------STNKTNMSDV 113
           + +  +KP  +L+H FG ++   WQ+  QV+ LS  F LY+P        S++  N S++
Sbjct: 48  SSENTQKPSLLLLHGFGPSAV--WQWSHQVKPLSHFFRLYVPDLVFFGGSSSSGENRSEM 107

Query: 114 FLAICVGEGIKRLGVEKHSVVG 128
           F A+C+G+ +++L VE+ SVVG
Sbjct: 108 FQALCMGKLMEKLEVERFSVVG 127

[Close]
BLAST of CSPI03G28920 vs. TAIR10
Match: AT1G72620.1 (AT1G72620.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 1 

Query: 60  KPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDVFLAICV 119
           +P  +++H +GGNSK  WQF  QV DLS+ F+L++P         +  T+ +  F A  +
Sbjct: 82  RPNLVMLHGYGGNSK--WQFIHQVSDLSKSFNLFIPDLVFFGKSYSRNTDRTIEFQARSI 141

[Close]
BLAST of CSPI03G28920 vs. NCBI nr
Match: gi|1000960719|ref|XP_015576092.1| (PREDICTED: lipase 1 [Ricinus communis])

HSP 1 Score: 83.2 bits (204), Expect = 4.1e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 113
           N++   +P  +L+H +GGNS+  WQF +QVR LS+ F+LY+P         TN+T+ SD+
Sbjct: 71  NRRQFNRPNLVLIHGYGGNSR--WQFLNQVRPLSKSFNLYIPDLLFFGDSYTNRTDRSDI 130

Query: 114 FLAICVGEGIKRLGVEKHSVVG 128
           F A C  EG+K+LGVEK++VVG
Sbjct: 131 FQAKCASEGLKKLGVEKYNVVG 150

[Close]
BLAST of CSPI03G28920 vs. NCBI nr
Match: gi|223539402|gb|EEF40992.1| (abhydrolase domain containing, putative [Ricinus communis])

HSP 1 Score: 83.2 bits (204), Expect = 4.1e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 113
           N++   +P  +L+H +GGNS+  WQF +QVR LS+ F+LY+P         TN+T+ SD+
Sbjct: 71  NRRQFNRPNLVLIHGYGGNSR--WQFLNQVRPLSKSFNLYIPDLLFFGDSYTNRTDRSDI 130

Query: 114 FLAICVGEGIKRLGVEKHSVVG 128
           F A C  EG+K+LGVEK++VVG
Sbjct: 131 FQAKCASEGLKKLGVEKYNVVG 150

[Close]
BLAST of CSPI03G28920 vs. NCBI nr
Match: gi|595967525|ref|XP_007217295.1| (hypothetical protein PRUPE_ppa018297mg [Prunus persica])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 113
           N +   KP  +++H +GGNSK  WQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 73  NSRRSNKPALVMLHGYGGNSK--WQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 132

Query: 114 FLAICVGEGIKRLGVEKHSV 126
           F A CV EG+KRLGVE+ +V
Sbjct: 133 FQAKCVAEGLKRLGVERFAV 150

[Close]
BLAST of CSPI03G28920 vs. NCBI nr
Match: gi|645243908|ref|XP_008228193.1| (PREDICTED: monoacylglycerol lipase abhd6-B-like [Prunus mume])

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-10
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 113
           N +   KP  +++H +GGNSK  WQF  QV  LS+ F LY+P         TN+   ++V
Sbjct: 75  NSRRSNKPALVMLHGYGGNSK--WQFIHQVGSLSQSFYLYIPDLLFFGKSYTNRLERTEV 134

Query: 114 FLAICVGEGIKRLGVEKHSV 126
           F A CV EG+KRLGVE+ +V
Sbjct: 135 FQAKCVAEGLKRLGVERFAV 152

[Close]
BLAST of CSPI03G28920 vs. NCBI nr
Match: gi|645243899|ref|XP_008228189.1| (PREDICTED: monoacylglycerol lipase abhd6-B-like [Prunus mume])

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-10
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 54  NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 113
           N +   KP  +++H +GGNSK  WQF  QV  LS+ F LY+P         TN+   ++V
Sbjct: 75  NSRRSNKPALVMLHGYGGNSK--WQFIHQVGSLSQSFYLYIPDLLFFGKSYTNRLERTEV 134

Query: 114 FLAICVGEGIKRLGVEKHSV 126
           F A CV EG+KRLGVE+ +V
Sbjct: 135 FQAKCVAEGLKRLGVERFAV 152

The following BLAST results are available for this feature:
BLAST of CSPI03G28920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G28920 vs. TrEMBL
Match NameE-valueIdentityDescription
B9S5Q5_RICCO2.8e-1347.56Abhydrolase domain containing, putative OS=Ricinus communis GN=RCOM_0652430 PE=4... [more]
M5WXW7_PRUPE2.2e-1045.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018297mg PE=4 SV=1[more]
A0A103YB46_CYNCS3.2e-0947.37Alpha/beta hydrolase fold-1 OS=Cynara cardunculus var. scolymus GN=Ccrd_015805 P... [more]
A0A068TND9_COFCA4.2e-0944.74Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021774001 PE=4 SV=1[more]
A0A059AHN6_EUCGR4.2e-0946.67Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02811 PE=4 SV=1[more]
BLAST of CSPI03G28920 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G21950.11.4e-0836.59 alpha/beta-Hydrolases superfamily protein[more]
AT1G72620.11.0e-0638.24 alpha/beta-Hydrolases superfamily protein[more]
BLAST of CSPI03G28920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1000960719|ref|XP_015576092.1|4.1e-1347.56PREDICTED: lipase 1 [Ricinus communis][more]
gi|223539402|gb|EEF40992.1|4.1e-1347.56abhydrolase domain containing, putative [Ricinus communis][more]
gi|595967525|ref|XP_007217295.1|3.2e-1045.00hypothetical protein PRUPE_ppa018297mg [Prunus persica][more]
gi|645243908|ref|XP_008228193.1|7.2e-1045.00PREDICTED: monoacylglycerol lipase abhd6-B-like [Prunus mume][more]
gi|645243899|ref|XP_008228189.1|7.2e-1045.00PREDICTED: monoacylglycerol lipase abhd6-B-like [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G28920.1CSPI03G28920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10992ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEINcoord: 60..127
score: 1.1
NoneNo IPR availablePANTHERPTHR10992:SF828ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATEDcoord: 60..127
score: 1.1