CsaV3_UNG227970 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG227970
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Alpha/beta hydrolase fold
Location	scaffold114 : 124514 .. 124963 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTCCTTCTTTCTCTTCCATTTTCCATGATTCTTTCTCTCAATCCTTCGACATCTTATCTTCTCCCTCTCCATTTCAATACTCAAAACAGGGTTTAACCTCAGTTTCATACTCTGCAACTTGTCACCAAGCAGCATTTGGATTGACACAGACACAATAATGCAATTCCAGACATCAAAACAAACAAACCCAAAAAAAGCCCTGTGCTATTCTAGTCCATTGCTTCGGTGGGAACTCCAAATCCAAATGGCAATTCTTTTCCCAAGTTAGAGACTTGTCAAGATGCTTCAGTTTGTACTTACCCAGCACCAACAAAACCAACATGTCGGATGTGTTCCTAGCGATTTGTGTAGGCGAAGGAATAAAAAGATTGGGTGTGGAGAAGCATAGCGTAGTGGGGAAAGGGGATCAACTATGGAGGATACGTGGCATACCGGATGGCTGA

mRNA sequence

TGCAATTCCAGACATCAAAACAAACAAACCCAAAAAAAGCCCTGTGCTATTCTAGTCCATTGCTTCGGTGGGAACTCCAAATCCAAATGGCAATTCTTTTCCCAAGTTAGAGACTTGTCAAGATGCTTCAGTTTGTACTTACCCAGCACCAACAAAACCAACATGTCGGATGTGTTCCTAGCGATTTGTGTAGGCGAAGGAATAAAAAGATTGGGTGTGGAGAAGCATAGCGTAGTGGGGAAAGGGGATCAACTATGGAGGATACGTGGCATACCGGATGGCTG

Coding sequence (CDS)

TGCAATTCCAGACATCAAAACAAACAAACCCAAAAAAAGCCCTGTGCTATTCTAGTCCATTGCTTCGGTGGGAACTCCAAATCCAAATGGCAATTCTTTTCCCAAGTTAGAGACTTGTCAAGATGCTTCAGTTTGTACTTACCCAGCACCAACAAAACCAACATGTCGGATGTGTTCCTAGCGATTTGTGTAGGCGAAGGAATAAAAAGATTGGGTGTGGAGAAGCATAGCGTAGTGGGGAAAGGGGATCAACTATGGAGGATACGTGGCATACCGGATGGCTG

Protein sequence

CNSRHQNKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPSTNKTNMSDVFLAICVGEGIKRLGVEKHSVVGKGDQLWRIRGIPDGX

Homology

[Close]

BLAST of CsaV3_UNG227970 vs. NCBI nr
Match: XP_015576092.1 (uncharacterized protein LOC8284649 [Ricinus communis])

HSP 1 Score: 83.2 bits (204), Expect = 5.3e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N++   +P  +L+H +GGN  S+WQF +QVR LS+ F+LY+P         TN+T+ SD+
Sbjct: 71  NRRQFNRPNLVLIHGYGGN--SRWQFLNQVRPLSKSFNLYIPDLLFFGDSYTNRTDRSDI 130

Query: 67  FLAICVGEGIKRLGVEKHSVVG 81
           F A C  EG+K+LGVEK++VVG
Sbjct: 131 FQAKCASEGLKKLGVEKYNVVG 150

[Close]

BLAST of CsaV3_UNG227970 vs. NCBI nr
Match: EEF40992.1 (abhydrolase domain containing, putative [Ricinus communis])

HSP 1 Score: 83.2 bits (204), Expect = 5.3e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N++   +P  +L+H +GGN  S+WQF +QVR LS+ F+LY+P         TN+T+ SD+
Sbjct: 71  NRRQFNRPNLVLIHGYGGN--SRWQFLNQVRPLSKSFNLYIPDLLFFGDSYTNRTDRSDI 130

Query: 67  FLAICVGEGIKRLGVEKHSVVG 81
           F A C  EG+K+LGVEK++VVG
Sbjct: 131 FQAKCASEGLKKLGVEKYNVVG 150

[Close]

BLAST of CsaV3_UNG227970 vs. NCBI nr
Match: ONI15372.1 (hypothetical protein PRUPE_3G040000 [Prunus persica])

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N +   KP  +++H +GGN  SKWQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 56  NSRRSNKPALVMLHGYGGN--SKWQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 115

Query: 67  FLAICVGEGIKRLGVEKHSV 79
           F A CV EG+KRLGVE+ +V
Sbjct: 116 FQAKCVAEGLKRLGVERFAV 133

[Close]

BLAST of CsaV3_UNG227970 vs. NCBI nr
Match: XP_007217295.2 (uncharacterized protein LOC18784402 [Prunus persica] >ONI15373.1 hypothetical protein PRUPE_3G040000 [Prunus persica])

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N +   KP  +++H +GGN  SKWQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 91  NSRRSNKPALVMLHGYGGN--SKWQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 150

Query: 67  FLAICVGEGIKRLGVEKHSV 79
           F A CV EG+KRLGVE+ +V
Sbjct: 151 FQAKCVAEGLKRLGVERFAV 168

[Close]

BLAST of CsaV3_UNG227970 vs. NCBI nr
Match: ONI15371.1 (hypothetical protein PRUPE_3G040000 [Prunus persica])

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N +   KP  +++H +GGN  SKWQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 91  NSRRSNKPALVMLHGYGGN--SKWQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 150

Query: 67  FLAICVGEGIKRLGVEKHSV 79
           F A CV EG+KRLGVE+ +V
Sbjct: 151 FQAKCVAEGLKRLGVERFAV 168

[Close]

BLAST of CsaV3_UNG227970 vs. TAIR10
Match: AT5G21950.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 9   QTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLP--------STNKTNMSDVFL 68
           +  +KP  +L+H FG    + WQ+  QV+ LS  F LY+P        S++  N S++F 
Sbjct: 50  ENTQKPSLLLLHGFG--PSAVWQWSHQVKPLSHFFRLYVPDLVFFGGSSSSGENRSEMFQ 109

Query: 69  AICVGEGIKRLGVEKHSVVG 81
           A+C+G+ +++L VE+ SVVG
Sbjct: 110 ALCMGKLMEKLEVERFSVVG 127

[Close]

BLAST of CsaV3_UNG227970 vs. TAIR10
Match: AT1G72620.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.9e-07
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 13  KPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDVFLAICV 72
           +P  +++H +GGN  SKWQF  QV DLS+ F+L++P         +  T+ +  F A  +
Sbjct: 82  RPNLVMLHGYGGN--SKWQFIHQVSDLSKSFNLFIPDLVFFGKSYSRNTDRTIEFQARSI 141

[Close]

BLAST of CsaV3_UNG227970 vs. TAIR10
Match: AT1G78210.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.6e-06
Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 9   QTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLP--------STNKTNMSDVFL 68
           +++ KP  +L+H  G  + + WQ++   R LSR F+LY+P        ST +   SD+F 
Sbjct: 47  ESKPKPNLLLIHGLG--ATAIWQWYDVARRLSRYFNLYIPDLVFFGGSSTTRPERSDIFQ 106

Query: 69  AICVGEGIKRLGVEKHSVVG 81
           A  +   ++   V+K S+VG
Sbjct: 107 AQTLMRALEAQSVKKFSLVG 124

[Close]

BLAST of CsaV3_UNG227970 vs. TAIR10
Match: AT1G17430.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 17  ILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLP---------STNKTNMSDVFLAICVGEG 73
           +++H +GGN  SKWQF  QV DLS+ F+L++P         S N+    ++     VG G
Sbjct: 82  VMLHGYGGN--SKWQFVHQVSDLSKSFNLFIPDLVFFGKSYSKNRDRSVEIQARSVVG-G 141

[Close]

BLAST of CsaV3_UNG227970 vs. TrEMBL
Match: tr|B9S5Q5|B9S5Q5_RICCO (Abhydrolase domain containing, putative OS=Ricinus communis OX=3988 GN=RCOM_0652430 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N++   +P  +L+H +GGN  S+WQF +QVR LS+ F+LY+P         TN+T+ SD+
Sbjct: 71  NRRQFNRPNLVLIHGYGGN--SRWQFLNQVRPLSKSFNLYIPDLLFFGDSYTNRTDRSDI 130

Query: 67  FLAICVGEGIKRLGVEKHSVVG 81
           F A C  EG+K+LGVEK++VVG
Sbjct: 131 FQAKCASEGLKKLGVEKYNVVG 150

[Close]

BLAST of CsaV3_UNG227970 vs. TrEMBL
Match: tr|A0A251PUZ5|A0A251PUZ5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G040000 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N +   KP  +++H +GGN  SKWQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 91  NSRRSNKPALVMLHGYGGN--SKWQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 150

Query: 67  FLAICVGEGIKRLGVEKHSV 79
           F A CV EG+KRLGVE+ +V
Sbjct: 151 FQAKCVAEGLKRLGVERFAV 168

[Close]

BLAST of CsaV3_UNG227970 vs. TrEMBL
Match: tr|A0A251PV51|A0A251PV51_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G040000 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N +   KP  +++H +GGN  SKWQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 56  NSRRSNKPALVMLHGYGGN--SKWQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 115

Query: 67  FLAICVGEGIKRLGVEKHSV 79
           F A CV EG+KRLGVE+ +V
Sbjct: 116 FQAKCVAEGLKRLGVERFAV 133

[Close]

BLAST of CsaV3_UNG227970 vs. TrEMBL
Match: tr|M5WXW7|M5WXW7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018297mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N +   KP  +++H +GGN  SKWQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 73  NSRRSNKPALVMLHGYGGN--SKWQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 132

Query: 67  FLAICVGEGIKRLGVEKHSV 79
           F A CV EG+KRLGVE+ +V
Sbjct: 133 FQAKCVAEGLKRLGVERFAV 150

[Close]

BLAST of CsaV3_UNG227970 vs. TrEMBL
Match: tr|A0A251PUX2|A0A251PUX2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G040000 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 7   NKQTQKKPCAILVHCFGGNSKSKWQFFSQVRDLSRCFSLYLPS--------TNKTNMSDV 66
           N +   KP  +++H +GGN  SKWQF  QV  LS+ F+LY+P         TN+   ++V
Sbjct: 91  NSRRSNKPALVMLHGYGGN--SKWQFIHQVGSLSQSFNLYIPDLLFFGKSYTNRPERTEV 150

Query: 67  FLAICVGEGIKRLGVEKHSV 79
           F A CV EG+KRLGVE+ +V
Sbjct: 151 FQAKCVAEGLKRLGVERFAV 168

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG227970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015576092.1	5.3e-13	47.56	uncharacterized protein LOC8284649 [Ricinus communis]	[more]
EEF40992.1	5.3e-13	47.56	abhydrolase domain containing, putative [Ricinus communis]	[more]
ONI15372.1	4.2e-10	45.00	hypothetical protein PRUPE_3G040000 [Prunus persica]	[more]
XP_007217295.2	4.2e-10	45.00	uncharacterized protein LOC18784402 [Prunus persica] >ONI15373.1 hypothetical pr...	[more]
ONI15371.1	4.2e-10	45.00	hypothetical protein PRUPE_3G040000 [Prunus persica]	[more]

BLAST of CsaV3_UNG227970 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21950.1	1.3e-08	37.50	alpha/beta-Hydrolases superfamily protein	[more]
AT1G72620.1	6.9e-07	38.24	alpha/beta-Hydrolases superfamily protein	[more]
AT1G78210.1	7.6e-06	32.50	alpha/beta-Hydrolases superfamily protein	[more]
AT1G17430.1	2.2e-05	38.46	alpha/beta-Hydrolases superfamily protein	[more]

BLAST of CsaV3_UNG227970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG227970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9S5Q5\|B9S5Q5_RICCO	3.5e-13	47.56	Abhydrolase domain containing, putative OS=Ricinus communis OX=3988 GN=RCOM_0652...	[more]
tr\|A0A251PUZ5\|A0A251PUZ5_PRUPE	2.8e-10	45.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G040000 PE=4 SV=1	[more]
tr\|A0A251PV51\|A0A251PV51_PRUPE	2.8e-10	45.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G040000 PE=4 SV=1	[more]
tr\|M5WXW7\|M5WXW7_PRUPE	2.8e-10	45.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018297mg PE=4 SV=1	[more]
tr\|A0A251PUX2\|A0A251PUX2_PRUPE	2.8e-10	45.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G040000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG227970.1	CsaV3_UNG227970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43139:SF1	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED	coord: 8..79
None	No IPR available	PANTHER	PTHR43139	FAMILY NOT NAMED	coord: 8..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG227970	CSPI03G28920	Wild cucumber (PI 183967)	cpicucB133

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None