CSPI03G25030 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G25030
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transcription factor, putative
Location	Chr3 : 22250661 .. 22250930 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG

mRNA sequence

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG

Coding sequence (CDS)

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG

Homology

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BLAST of CSPI03G25030 vs. Swiss-Prot
Match: BH151_ARATH (Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 33/78 (42.31%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 12 RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of CSPI03G25030 vs. TrEMBL
Match: A0A0A0L8J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CSPI03G25030 vs. TrEMBL
Match: B9GSV5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19420g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.2e-10
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of CSPI03G25030 vs. TrEMBL
Match: A0A067JWP1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14053 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK+VP+SESM L GLFRETADYI+ LQM+V++MQ +V VL GS +
Sbjct: 73  RRVRTLKKLVPRSESMGLEGLFRETADYILTLQMRVKVMQIMVKVLAGSSD 123

[Close]

BLAST of CSPI03G25030 vs. TrEMBL
Match: A0A0R0I545_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G217100 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 21  KKVEMVSR--SSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMM 80
           +++ M+ R   SR        +R+R+LK +VP S+S+EL+GLFR+TADYI+ LQ +VR+M
Sbjct: 51  RRILMMKRRSGSRRGSNNGIRRRVRKLKSLVPNSDSLELDGLFRDTADYILSLQTRVRVM 110

Query: 81  QALVHVLNGSDE 91
           Q +V VL GSD+
Sbjct: 111 QVMVKVLTGSDD 122

[Close]

BLAST of CSPI03G25030 vs. TrEMBL
Match: A0A0B2QAS0_GLYSO (Transcription factor UPBEAT1 OS=Glycine soja GN=glysoja_011553 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 21  KKVEMVSR--SSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMM 80
           +++ M+ R   SR        +R+R+LK +VP S+S+EL+GLFR+TADYI+ LQ +VR+M
Sbjct: 56  RRILMMKRRSGSRRGSNNGIRRRVRKLKSLVPNSDSLELDGLFRDTADYILSLQTRVRVM 115

Query: 81  QALVHVLNGSDE 91
           Q +V VL GSD+
Sbjct: 116 QVMVKVLTGSDD 127

[Close]

BLAST of CSPI03G25030 vs. TAIR10
Match: AT2G47270.1 (AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 33/78 (42.31%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 12 RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of CSPI03G25030 vs. NCBI nr
Match: gi|700203000|gb|KGN58133.1| (hypothetical protein Csa_3G536650 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 6.1e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CSPI03G25030 vs. NCBI nr
Match: gi|620597437|gb|AHY20045.1| (basic helix-loop-helix protein [Populus simonii x Populus nigra])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of CSPI03G25030 vs. NCBI nr
Match: gi|224064594|ref|XP_002301522.1| (hypothetical protein POPTR_0002s19420g [Populus trichocarpa])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of CSPI03G25030 vs. NCBI nr
Match: gi|802700698|ref|XP_012083805.1| (PREDICTED: transcription factor UPBEAT1 [Jatropha curcas])

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK+VP+SESM L GLFRETADYI+ LQM+V++MQ +V VL GS +
Sbjct: 73  RRVRTLKKLVPRSESMGLEGLFRETADYILTLQMRVKVMQIMVKVLAGSSD 123

[Close]

BLAST of CSPI03G25030 vs. NCBI nr
Match: gi|947086266|gb|KRH34987.1| (hypothetical protein GLYMA_10G217100 [Glycine max])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 21  KKVEMVSR--SSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMM 80
           +++ M+ R   SR        +R+R+LK +VP S+S+EL+GLFR+TADYI+ LQ +VR+M
Sbjct: 51  RRILMMKRRSGSRRGSNNGIRRRVRKLKSLVPNSDSLELDGLFRDTADYILSLQTRVRVM 110

Query: 81  QALVHVLNGSDE 91
           Q +V VL GSD+
Sbjct: 111 QVMVKVLTGSDD 122

The following BLAST results are available for this feature:

BLAST of CSPI03G25030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH151_ARATH	2.8e-07	42.31	Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2 SV=1	[more]

BLAST of CSPI03G25030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6_CUCSA	4.2e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536650 PE=4 SV=1	[more]
B9GSV5_POPTR	9.2e-10	64.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19420g PE=4 SV=1	[more]
A0A067JWP1_JATCU	3.5e-09	64.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14053 PE=4 SV=1	[more]
A0A0R0I545_SOYBN	1.3e-08	48.61	Uncharacterized protein OS=Glycine max GN=GLYMA_10G217100 PE=4 SV=1	[more]
A0A0B2QAS0_GLYSO	1.3e-08	48.61	Transcription factor UPBEAT1 OS=Glycine soja GN=glysoja_011553 PE=4 SV=1	[more]

BLAST of CSPI03G25030 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47270.1	1.6e-08	42.31	sequence-specific DNA binding transcription factors;transcription re...	[more]

BLAST of CSPI03G25030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203000\|gb\|KGN58133.1\|	6.1e-39	100.00	hypothetical protein Csa_3G536650 [Cucumis sativus]	[more]
gi\|620597437\|gb\|AHY20045.1\|	1.3e-09	64.71	basic helix-loop-helix protein [Populus simonii x Populus nigra]	[more]
gi\|224064594\|ref\|XP_002301522.1\|	1.3e-09	64.71	hypothetical protein POPTR_0002s19420g [Populus trichocarpa]	[more]
gi\|802700698\|ref\|XP_012083805.1\|	5.0e-09	64.71	PREDICTED: transcription factor UPBEAT1 [Jatropha curcas]	[more]
gi\|947086266\|gb\|KRH34987.1\|	1.9e-08	48.61	hypothetical protein GLYMA_10G217100 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000280	regulation of root development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G25030.1	CSPI03G25030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 41..83 score: 2.
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 10..90 score: 1.3
None	No IPR available	PANTHER	PTHR33124:SF13	TRANSCRIPTION FACTOR UPBEAT1	coord: 10..90 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G25030	Cla017347	Watermelon (97103) v1	cpiwmB205
CSPI03G25030	Csa3G536650	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G25030	MELO3C012934	Melon (DHL92) v3.5.1	cpimeB206
CSPI03G25030	ClCG10G011560	Watermelon (Charleston Gray)	cpiwcgB198
CSPI03G25030	Lsi03G011230	Bottle gourd (USVL1VR-Ls)	cpilsiB187
CSPI03G25030	MELO3C012934.2	Melon (DHL92) v3.6.1	cpimedB197
CSPI03G25030	CsaV3_3G026610	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G25030	Cla97C10G194380	Watermelon (97103) v2	cpiwmbB192
CSPI03G25030	Bhi11G001080	Wax gourd	cpiwgoB248
CSPI03G25030	Cucsa.300600	Cucumber (Gy14) v1	cgycpiB451
CSPI03G25030	CmaCh01G002800	Cucurbita maxima (Rimu)	cmacpiB454
CSPI03G25030	CmoCh01G002880	Cucurbita moschata (Rifu)	cmocpiB442
CSPI03G25030	Cp4.1LG02g16230	Cucurbita pepo (Zucchini)	cpecpiB565

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G25030	Cucumber (Gy14) v2	cgybcpiB110