CSPI03G25030.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G25030.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transcription factor, putative
Location	Chr3 : 22250661 .. 22250930 (-)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG

mRNA sequence

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG

Coding sequence (CDS)

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG

Homology

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BLAST of CSPI03G25030.1 vs. Swiss-Prot
Match: BH151_ARATH (Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 33/78 (42.31%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 12 RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of CSPI03G25030.1 vs. TrEMBL
Match: A0A0A0L8J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CSPI03G25030.1 vs. TrEMBL
Match: B9GSV5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19420g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.2e-10
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of CSPI03G25030.1 vs. TrEMBL
Match: A0A067JWP1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14053 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK+VP+SESM L GLFRETADYI+ LQM+V++MQ +V VL GS +
Sbjct: 73  RRVRTLKKLVPRSESMGLEGLFRETADYILTLQMRVKVMQIMVKVLAGSSD 123

[Close]

BLAST of CSPI03G25030.1 vs. TrEMBL
Match: A0A0R0I545_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G217100 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 21  KKVEMVSR--SSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMM 80
           +++ M+ R   SR        +R+R+LK +VP S+S+EL+GLFR+TADYI+ LQ +VR+M
Sbjct: 51  RRILMMKRRSGSRRGSNNGIRRRVRKLKSLVPNSDSLELDGLFRDTADYILSLQTRVRVM 110

Query: 81  QALVHVLNGSDE 91
           Q +V VL GSD+
Sbjct: 111 QVMVKVLTGSDD 122

[Close]

BLAST of CSPI03G25030.1 vs. TrEMBL
Match: A0A0B2QAS0_GLYSO (Transcription factor UPBEAT1 OS=Glycine soja GN=glysoja_011553 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 21  KKVEMVSR--SSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMM 80
           +++ M+ R   SR        +R+R+LK +VP S+S+EL+GLFR+TADYI+ LQ +VR+M
Sbjct: 56  RRILMMKRRSGSRRGSNNGIRRRVRKLKSLVPNSDSLELDGLFRDTADYILSLQTRVRVM 115

Query: 81  QALVHVLNGSDE 91
           Q +V VL GSD+
Sbjct: 116 QVMVKVLTGSDD 127

[Close]

BLAST of CSPI03G25030.1 vs. TAIR10
Match: AT2G47270.1 (AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 33/78 (42.31%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 12 RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of CSPI03G25030.1 vs. NCBI nr
Match: gi|700203000|gb|KGN58133.1| (hypothetical protein Csa_3G536650 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 6.1e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CSPI03G25030.1 vs. NCBI nr
Match: gi|620597437|gb|AHY20045.1| (basic helix-loop-helix protein [Populus simonii x Populus nigra])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of CSPI03G25030.1 vs. NCBI nr
Match: gi|224064594|ref|XP_002301522.1| (hypothetical protein POPTR_0002s19420g [Populus trichocarpa])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of CSPI03G25030.1 vs. NCBI nr
Match: gi|802700698|ref|XP_012083805.1| (PREDICTED: transcription factor UPBEAT1 [Jatropha curcas])

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R LKK+VP+SESM L GLFRETADYI+ LQM+V++MQ +V VL GS +
Sbjct: 73  RRVRTLKKLVPRSESMGLEGLFRETADYILTLQMRVKVMQIMVKVLAGSSD 123

[Close]

BLAST of CSPI03G25030.1 vs. NCBI nr
Match: gi|947086266|gb|KRH34987.1| (hypothetical protein GLYMA_10G217100 [Glycine max])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 21  KKVEMVSR--SSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMM 80
           +++ M+ R   SR        +R+R+LK +VP S+S+EL+GLFR+TADYI+ LQ +VR+M
Sbjct: 51  RRILMMKRRSGSRRGSNNGIRRRVRKLKSLVPNSDSLELDGLFRDTADYILSLQTRVRVM 110

Query: 81  QALVHVLNGSDE 91
           Q +V VL GSD+
Sbjct: 111 QVMVKVLTGSDD 122

The following BLAST results are available for this feature:

BLAST of CSPI03G25030.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH151_ARATH	2.8e-07	42.31	Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2 SV=1	[more]

BLAST of CSPI03G25030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6_CUCSA	4.2e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536650 PE=4 SV=1	[more]
B9GSV5_POPTR	9.2e-10	64.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19420g PE=4 SV=1	[more]
A0A067JWP1_JATCU	3.5e-09	64.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14053 PE=4 SV=1	[more]
A0A0R0I545_SOYBN	1.3e-08	48.61	Uncharacterized protein OS=Glycine max GN=GLYMA_10G217100 PE=4 SV=1	[more]
A0A0B2QAS0_GLYSO	1.3e-08	48.61	Transcription factor UPBEAT1 OS=Glycine soja GN=glysoja_011553 PE=4 SV=1	[more]

BLAST of CSPI03G25030.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47270.1	1.6e-08	42.31	sequence-specific DNA binding transcription factors;transcription re...	[more]

BLAST of CSPI03G25030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203000\|gb\|KGN58133.1\|	6.1e-39	100.00	hypothetical protein Csa_3G536650 [Cucumis sativus]	[more]
gi\|620597437\|gb\|AHY20045.1\|	1.3e-09	64.71	basic helix-loop-helix protein [Populus simonii x Populus nigra]	[more]
gi\|224064594\|ref\|XP_002301522.1\|	1.3e-09	64.71	hypothetical protein POPTR_0002s19420g [Populus trichocarpa]	[more]
gi\|802700698\|ref\|XP_012083805.1\|	5.0e-09	64.71	PREDICTED: transcription factor UPBEAT1 [Jatropha curcas]	[more]
gi\|947086266\|gb\|KRH34987.1\|	1.9e-08	48.61	hypothetical protein GLYMA_10G217100 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:2000280	regulation of root development
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G25030	CSPI03G25030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G25030.1	CSPI03G25030.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G25030.mrna.cds.1	CSPI03G25030.mrna.cds.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 41..83 score: 2.
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 10..90 score: 1.3
None	No IPR available	PANTHER	PTHR33124:SF13	TRANSCRIPTION FACTOR UPBEAT1	coord: 10..90 score: 1.3