MELO3C012934 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012934
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor, putative
Location	chr4 : 14715914 .. 14716743 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATGAAAAAAGCTAATCAGCTACCAATATAGCTCCTTAATTATAAGTTTTTACACACACTTCAAATTTCTTGAACAACCAACCCTTCAAAAAAAAATCTAAACATACTTCCCTTTTTCATGTGTTGACAACATTATATATGTTGCATGTTTTGTGGACCCTTTGCCCTAAATTTTATGCATTATCCTCACTATCTCAAAACCTTAAGCTTTTTGAAATCCATTTTTATAAAACCCCTCCAATTTTATGATGTTTTGAATCATCATGAAGATTTGAAGAGATATAGCTAAGTTTAAGCAGTTTATTGAGAGGTATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTCGTCGGAGAAGAGGATTTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGATTATACTGAATCAATCCATTCTATATGTGTAAATATTATATTATTGATGTATTTTCTTTTCTTCTTTCCTTCCTTTTCTGCTTAATTAAGTTTTTATTCTTTGTGTTGTTTATTTCTCAGTTGTGGATTGTAAAAGAAAAATCCTTTCATTTGGAATGTCTTTCTTAGCTTGAGATCAAAGGGGTAAATTTGTTTACACCTTCATATGTTTTTGTTTAATACTAATTAATTACTTTGATGCCT

mRNA sequence

AACATGAAAAAAGCTAATCAGCTACCAATATAGCTCCTTAATTATAAGTTTTTACACACACTTCAAATTTCTTGAACAACCAACCCTTCAAAAAAAAATCTAAACATACTTCCCTTTTTCATGTGTTGACAACATTATATATGTTGCATGTTTTGTGGACCCTTTGCCCTAAATTTTATGCATTATCCTCACTATCTCAAAACCTTAAGCTTTTTGAAATCCATTTTTATAAAACCCCTCCAATTTTATGATGTTTTGAATCATCATGAAGATTTGAAGAGATATAGCTAAGTTTAAGCAGTTTATTGAGAGGTATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTCGTCGGAGAAGAGGATTTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGATTATACTGAATCAATCCATTCTATATGTGTAAATATTATATTATTGATGTATTTTCTTTTCTTCTTTCCTTCCTTTTCTGCTTAATTAAGTTTTTATTCTTTGTGTTGTTTATTTCTCAGTTGTGGATTGTAAAAGAAAAATCCTTTCATTTGGAATGTCTTTCTTAGCTTGAGATCAAAGGGGTAAATTTGTTTACACCTTCATATGTTTTTGTTTAATACTAATTAATTACTTTGATGCCT

Coding sequence (CDS)

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTTGTCAAGGTCGTCGGAGAAGAGGATTTGTCTGAAGAGGATTAGGAAGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTCTTTCGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGA

Protein sequence

MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE*

Homology

[Close]

BLAST of MELO3C012934 vs. Swiss-Prot
Match: BH151_ARATH (Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-08
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = 1


Query: 12 RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ L++++P +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of MELO3C012934 vs. TrEMBL
Match: A0A0A0L8J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-39
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of MELO3C012934 vs. TrEMBL
Match: B9GSV5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19420g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-10
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of MELO3C012934 vs. TrEMBL
Match: A0A0B2QAS0_GLYSO (Transcription factor UPBEAT1 OS=Glycine soja GN=glysoja_011553 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 6   KDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETA 65
           K T    R  ++++  K    SR   ++  R   +R+RKL+ ++P S+S+EL+GLFR+TA
Sbjct: 46  KGTKRSVRRPRRILMMKRRSGSRRGSNNGIR---RRVRKLKSLVPNSDSLELDGLFRDTA 105

Query: 66  DYIVWLQMKVRMMQALVHVLNGSDE 91
           DYI+ LQ +VR+MQ +V VL GSD+
Sbjct: 106 DYILSLQTRVRVMQVMVKVLTGSDD 127

[Close]

BLAST of MELO3C012934 vs. TrEMBL
Match: A0A0R0I545_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G217100 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 6   KDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETA 65
           K T    R  ++++  K    SR   ++  R   +R+RKL+ ++P S+S+EL+GLFR+TA
Sbjct: 41  KGTKRSVRRPRRILMMKRRSGSRRGSNNGIR---RRVRKLKSLVPNSDSLELDGLFRDTA 100

Query: 66  DYIVWLQMKVRMMQALVHVLNGSDE 91
           DYI+ LQ +VR+MQ +V VL GSD+
Sbjct: 101 DYILSLQTRVRVMQVMVKVLTGSDD 122

[Close]

BLAST of MELO3C012934 vs. TrEMBL
Match: I1LD82_SOYBN (BHLH transcription factor OS=Glycine max GN=Glyma10g36110.1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 6   KDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETA 65
           K T    R  ++++  K    SR   ++  R   +R+RKL+ ++P S+S+EL+GLFR+TA
Sbjct: 46  KGTKRSVRRPRRILMMKRRSGSRRGSNNGIR---RRVRKLKSLVPNSDSLELDGLFRDTA 105

Query: 66  DYIVWLQMKVRMMQALVHVLNGSDE 91
           DYI+ LQ +VR+MQ +V VL GSD+
Sbjct: 106 DYILSLQTRVRVMQVMVKVLTGSDD 127

[Close]

BLAST of MELO3C012934 vs. TAIR10
Match: AT2G47270.1 (AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators)

HSP 1 Score: 60.1 bits (144), Expect = 8.3e-10
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = 1


Query: 12 RRIAKQVIKKKVEMVSRLSRSSEKRICL---KRIRKLRKMIPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ L++++P +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of MELO3C012934 vs. TAIR10
Match: AT4G30410.2 (AT4G30410.2 sequence-specific DNA binding transcription factors)

HSP 1 Score: 48.1 bits (113), Expect = 3.3e-06
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 4   LAKDTVSDRRI---AKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGL 63
           L K TV  R+I   +K+++++K +  S  + +  KR+  +R + LR ++P  E M  + L
Sbjct: 89  LPKKTVCHRKIVRRSKKILRRKSKSASEEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVL 148

Query: 64  F-RETADYIVWLQMKVRMMQALV 83
             +ET DYIV LQ +V +M+++V
Sbjct: 149 LLQETLDYIVSLQTQVNVMRSIV 171

[Close]

BLAST of MELO3C012934 vs. NCBI nr
Match: gi|700203000|gb|KGN58133.1| (hypothetical protein Csa_3G536650 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-39
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 91
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of MELO3C012934 vs. NCBI nr
Match: gi|620597437|gb|AHY20045.1| (basic helix-loop-helix protein [Populus simonii x Populus nigra])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of MELO3C012934 vs. NCBI nr
Match: gi|224064594|ref|XP_002301522.1| (hypothetical protein POPTR_0002s19420g [Populus trichocarpa])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 40  KRIRKLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 91
           +R+R L+K+IP SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of MELO3C012934 vs. NCBI nr
Match: gi|947086266|gb|KRH34987.1| (hypothetical protein GLYMA_10G217100 [Glycine max])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 6   KDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETA 65
           K T    R  ++++  K    SR   ++  R   +R+RKL+ ++P S+S+EL+GLFR+TA
Sbjct: 41  KGTKRSVRRPRRILMMKRRSGSRRGSNNGIR---RRVRKLKSLVPNSDSLELDGLFRDTA 100

Query: 66  DYIVWLQMKVRMMQALVHVLNGSDE 91
           DYI+ LQ +VR+MQ +V VL GSD+
Sbjct: 101 DYILSLQTRVRVMQVMVKVLTGSDD 122

[Close]

BLAST of MELO3C012934 vs. NCBI nr
Match: gi|734364096|gb|KHN17079.1| (Transcription factor UPBEAT1 [Glycine soja])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 6   KDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETA 65
           K T    R  ++++  K    SR   ++  R   +R+RKL+ ++P S+S+EL+GLFR+TA
Sbjct: 46  KGTKRSVRRPRRILMMKRRSGSRRGSNNGIR---RRVRKLKSLVPNSDSLELDGLFRDTA 105

Query: 66  DYIVWLQMKVRMMQALVHVLNGSDE 91
           DYI+ LQ +VR+MQ +V VL GSD+
Sbjct: 106 DYILSLQTRVRVMQVMVKVLTGSDD 127

The following BLAST results are available for this feature:

BLAST of MELO3C012934 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH151_ARATH	1.5e-08	39.74	Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2 SV=1	[more]

BLAST of MELO3C012934 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6_CUCSA	2.5e-39	95.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536650 PE=4 SV=1	[more]
B9GSV5_POPTR	9.3e-10	64.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19420g PE=4 SV=1	[more]
A0A0B2QAS0_GLYSO	1.6e-09	43.53	Transcription factor UPBEAT1 OS=Glycine soja GN=glysoja_011553 PE=4 SV=1	[more]
A0A0R0I545_SOYBN	1.6e-09	43.53	Uncharacterized protein OS=Glycine max GN=GLYMA_10G217100 PE=4 SV=1	[more]
I1LD82_SOYBN	1.6e-09	43.53	BHLH transcription factor OS=Glycine max GN=Glyma10g36110.1 PE=2 SV=1	[more]

BLAST of MELO3C012934 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47270.1	8.3e-10	39.74	sequence-specific DNA binding transcription factors;transcription re...	[more]
AT4G30410.2	3.3e-06	34.94	sequence-specific DNA binding transcription factors	[more]

BLAST of MELO3C012934 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203000\|gb\|KGN58133.1\|	3.6e-39	95.56	hypothetical protein Csa_3G536650 [Cucumis sativus]	[more]
gi\|620597437\|gb\|AHY20045.1\|	1.3e-09	64.71	basic helix-loop-helix protein [Populus simonii x Populus nigra]	[more]
gi\|224064594\|ref\|XP_002301522.1\|	1.3e-09	64.71	hypothetical protein POPTR_0002s19420g [Populus trichocarpa]	[more]
gi\|947086266\|gb\|KRH34987.1\|	2.3e-09	43.53	hypothetical protein GLYMA_10G217100 [Glycine max]	[more]
gi\|734364096\|gb\|KHN17079.1\|	2.3e-09	43.53	Transcription factor UPBEAT1 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000280	regulation of root development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU43480	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012934T1	MELO3C012934T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU43480	MU43480	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 41..83 score: 1.
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 10..90 score: 5.0
None	No IPR available	PANTHER	PTHR33124:SF13	TRANSCRIPTION FACTOR UPBEAT1	coord: 10..90 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012934	Csa3G536650	Cucumber (Chinese Long) v2	cumeB214
MELO3C012934	Cla017347	Watermelon (97103) v1	mewmB348
MELO3C012934	ClCG10G011560	Watermelon (Charleston Gray)	mewcgB318
MELO3C012934	Cla97C10G194380	Watermelon (97103) v2	mewmbB319
MELO3C012934	Bhi11G001080	Wax gourd	mewgoB385
MELO3C012934	CSPI03G25030	Wild cucumber (PI 183967)	cpimeB206
MELO3C012934	Cucsa.300600	Cucumber (Gy14) v1	cgymeB494
MELO3C012934	CmaCh01G002800	Cucurbita maxima (Rimu)	cmameB419
MELO3C012934	CmoCh01G002880	Cucurbita moschata (Rifu)	cmomeB409
MELO3C012934	Lsi03G011230	Bottle gourd (USVL1VR-Ls)	lsimeB261
MELO3C012934	Cp4.1LG02g16230	Cucurbita pepo (Zucchini)	cpemeB523
MELO3C012934	CsaV3_3G026610	Cucumber (Chinese Long) v3	cucmeB210

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012934	Bottle gourd (USVL1VR-Ls)	lsimeB436
MELO3C012934	Cucumber (Gy14) v2	cgybmeB178
MELO3C012934	Silver-seed gourd	carmeB0754