CSPI03G23540 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G23540
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 20447025 .. 20447318 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA

mRNA sequence

ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA

Coding sequence (CDS)

ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA
Homology
[Close]
BLAST of CSPI03G23540 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.5e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61 EFEKWIRTLEKCFR 75
          EFEKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]
BLAST of CSPI03G23540 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1 

Query: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
           ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 5   IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61  EFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW 98
           E EKWIRTLEKCFRVMQCP++ +  LAVF LL+R +DW
Sbjct: 65  EAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 102

[Close]
BLAST of CSPI03G23540 vs. TrEMBL
Match: A0A0A0KCZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 28 LVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLA 87
          L++ ++ +PEKKFGIERLKAL A EFT   + E+ EKWIRTLEK FRV+QC ++ K    
Sbjct: 8  LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67

Query: 88 VFL 91
          V L
Sbjct: 68 VLL 70

[Close]
BLAST of CSPI03G23540 vs. TrEMBL
Match: A0A0A0LVF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-09
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1 

Query: 26  QRLVDIMAHQP---EKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDI 85
           Q+L  +   +P   +KK+GIE++KA G  EF+ T + E+  KW+R LEKCFRV+QC ++ 
Sbjct: 40  QQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEER 99

Query: 86  KEVLAVFLLQR 94
           K  LA FLL R
Sbjct: 100 KIDLAAFLLHR 110

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: gi|700202872|gb|KGN58005.1| (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61 EFEKWIRTLEKCFR 75
          EFEKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-25
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1 

Query: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
           ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 5   IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61  EFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW 98
           E EKWIRTLEKCFRVMQCP++ +  LAVF LL+R +DW
Sbjct: 65  EAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 102

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-16
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 1 

Query: 3   SEAHSVNLNAMKEQKEVVYDRVTQRLVD-IMAHQ--PEKKFGIERLKALGATEFTGTTKP 62
           S+A S   +     +E + DR+ QRL+  I + Q  PEKK+GIERLKALGAT F GTT P
Sbjct: 47  SDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNP 106

Query: 63  EEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQ-----RDKDW 98
            + E W+  +EKCFRV +CP+D K  LA FLLQ     + +DW
Sbjct: 107 ADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDW 149

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-12
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 17  KEVVYDRVTQRLVD-IMAHQP--EKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCF 76
           +E + DR+ QR V  I + Q   EKKF IERLKALG+T F  TT P   E W+  +EKCF
Sbjct: 42  EEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFARTTNPANAEAWLTLIEKCF 101

Query: 77  RVMQCPQDIKEVLAVFLLQRD-KDW 98
           RVM+C +D K  L+ FLLQ   +DW
Sbjct: 102 RVMRCSEDRKVELSAFLLQNGAEDW 126

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: gi|700191515|gb|KGN46719.1| (hypothetical protein Csa_6G127310 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 28 LVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLA 87
          L++ ++ +PEKKFGIERLKAL A EFT   + E+ EKWIRTLEK FRV+QC ++ K    
Sbjct: 8  LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67

Query: 88 VFL 91
          V L
Sbjct: 68 VLL 70

The following BLAST results are available for this feature:
BLAST of CSPI03G23540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G23540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X2_CUCSA4.5e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1[more]
A0A0A0LI31_CUCSA1.0e-2561.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
A0A0A0KCZ4_CUCSA3.1e-1157.14Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1[more]
A0A0A0LVF8_CUCSA5.0e-0947.89Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1[more]
BLAST of CSPI03G23540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G23540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202872|gb|KGN58005.1|6.4e-34100.00hypothetical protein Csa_3G426910 [Cucumis sativus][more]
gi|700206416|gb|KGN61535.1|1.4e-2561.22hypothetical protein Csa_2G163160 [Cucumis sativus][more]
gi|659072264|ref|XP_008464580.1|6.0e-1649.51PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|5.3e-1251.76PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|700191515|gb|KGN46719.1|4.5e-1157.14hypothetical protein Csa_6G127310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23540.1CSPI03G23540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G23540Cla000636Watermelon (97103) v1cpiwmB182
CSPI03G23540Csa3G426910Cucumber (Chinese Long) v2cpicuB120
CSPI03G23540CsaV3_3G023320Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G23540Cucumber (Gy14) v1cgycpiB369
CSPI03G23540Melon (DHL92) v3.5.1cpimeB201
CSPI03G23540Melon (DHL92) v3.6.1cpimedB195
CSPI03G23540Cucumber (Gy14) v2cgybcpiB110