Cla000636 (gene) Watermelon (97103) v1

Overview
NameCla000636
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 21952967 .. 21953278 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCTCGAGGCAGGCGAGCTAAGGAAGCAGTAGCCGAAACTTCTGAAGCTACTGGGTACCATGGAGATATGTCTGAGGGTGAATCTAGTCATCCTCAAGTTAAAGTCAATGTTGAGGAACAACGATTTACTAGAATTGCTCAGAGATTGGCTGCAAGCATTGGATCAGTGGAATCAGATCCAGAAAAGAAATACAGTATTGAAAGATTAAAGGCTTTAAGAGCTACTCCCTTTGAGGGCACCGTAGATCCTGTTGAAGCTGAAGTATGGCTAGATTTGCTCGAGAAATGCTATCGTGTAATGAGATGA

mRNA sequence

ATGCCACCTCGAGGCAGGCGAGCTAAGGAAGCAGTAGCCGAAACTTCTGAAGCTACTGGGTACCATGGAGATATGTCTGAGGGTGAATCTAGTCATCCTCAAGTTAAAGTCAATGTTGAGGAACAACGATTTACTAGAATTGCTCAGAGATTGGCTGCAAGCATTGGATCAGTGGAATCAGATCCAGAAAAGAAATACAGTATTGAAAGATTAAAGGCTTTAAGAGCTACTCCCTTTGAGGGCACCGTAGATCCTGTTGAAGCTGAAGTATGGCTAGATTTGCTCGAGAAATGCTATCGTGTAATGAGATGA

Coding sequence (CDS)

ATGCCACCTCGAGGCAGGCGAGCTAAGGAAGCAGTAGCCGAAACTTCTGAAGCTACTGGGTACCATGGAGATATGTCTGAGGGTGAATCTAGTCATCCTCAAGTTAAAGTCAATGTTGAGGAACAACGATTTACTAGAATTGCTCAGAGATTGGCTGCAAGCATTGGATCAGTGGAATCAGATCCAGAAAAGAAATACAGTATTGAAAGATTAAAGGCTTTAAGAGCTACTCCCTTTGAGGGCACCGTAGATCCTGTTGAAGCTGAAGTATGGCTAGATTTGCTCGAGAAATGCTATCGTGTAATGAGATGA

Protein sequence

MPPRGRRAKEAVAETSEATGYHGDMSEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVESDPEKKYSIERLKALRATPFEGTVDPVEAEVWLDLLEKCYRVMR
Homology
[Close]
BLAST of Cla000636 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 26  SEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVESDPEKKYSIERLKALRATPFEGTVDP 85
           SE  + +P  +   EE  + R AQRL   I ++    +K + IER+KAL AT F G  + 
Sbjct: 7   SEAHALNPNARREEEEALYDRFAQRL---INALAQQLKKNFGIERVKALGATEFNGIENH 66

Query: 86  VEAEVWLDLLEKCYRVMR 104
            EAE W+  LEKC+RVM+
Sbjct: 67  EEAEKWIRTLEKCFRVMQ 81

[Close]
BLAST of Cla000636 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 1 

Query: 26  SEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVESDPEKKYSIERLKALRATPFEGTVDP 85
           SE  S +       +E  + R+ QRL   +  +   PEKK+ IERLKAL AT F GT  P
Sbjct: 3   SEAHSVNLNAMKEQKEVVYDRVTQRL---VDIMAHQPEKKFGIERLKALGATEFTGTTKP 62

Query: 86  VEAEVWLDLLEKCYR 101
            E E W+  LEKC+R
Sbjct: 63  EEFEKWIRTLEKCFR 74

[Close]
BLAST of Cla000636 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 1 

Query: 3   PRGRRAKEAVAETSEAT---GYHGDMSEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVE 62
           PRGR  K   A+TS A          S+ ESS P V+ N+EEQ   R+AQRL + I S +
Sbjct: 21  PRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQ 80

Query: 63  SDPEKKYSIERLKALRATPFEGTVDPVEAEVWLDLLEKCYRVMR 104
           SDPEKKY IERLKAL AT F GT +P +AE WL L+EKC+RV R
Sbjct: 81  SDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTR 124

[Close]
BLAST of Cla000636 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 3   PRGRRAKEAVAETSEAT---GYHGDMSEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVE 62
           PRGR  K  VAE S A        +  + ESS P V+ NVEEQ   R+AQR  + I S +
Sbjct: 2   PRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQ 61

Query: 63  SDPEKKYSIERLKALRATPFEGTVDPVEAEVWLDLLEKCYRVMR 104
           SD EKK+ IERLKAL +T F  T +P  AE WL L+EKC+RVMR
Sbjct: 62  SDLEKKFEIERLKALGSTTFARTTNPANAEAWLTLIEKCFRVMR 105

[Close]
BLAST of Cla000636 vs. NCBI nr
Match: gi|659095113|ref|XP_008448403.1| (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 50/103 (48.54%), Postives = 60/103 (58.25%), Query Frame = 1 

Query: 1   MPPR-GRRAKEAVAETSEATGYHGDMSEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVE 60
           MPPR  RR K+   ET + T      SE  SS P+ +     +RF R AQ +        
Sbjct: 1   MPPRTSRRHKQNQDETQDPTQ---GQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGP 60

Query: 61  SDPEKKYSIERLKALRATPFEGTVDPVEAEVWLDLLEKCYRVM 103
           SDPEK Y IERLK L AT FEG+ DP  AEVWL++LEKC+ VM
Sbjct: 61  SDPEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVM 100

[Close]
BLAST of Cla000636 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 26  SEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVESDPEKKYSIERLKALRATPFEGTVDP 85
           SEGESSH Q  + V+E+   +I + +   + S+ ++ EK + IERLKAL AT F  T DP
Sbjct: 29  SEGESSHQQGDMTVDEKLLNKITEGITTGMRSLNNNLEKTFGIERLKALGATTFARTTDP 88

Query: 86  VEAEVWLDLLEKCYRVMR 104
            + E W+++LEKC++VMR
Sbjct: 89  TDGEGWMNVLEKCFKVMR 106

[Close]
BLAST of Cla000636 vs. NCBI nr
Match: gi|659087174|ref|XP_008444312.1| (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-10
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1 

Query: 26  SEGESSHPQVKVNVEEQRFTRIAQRLAASIGSVESDPEKKYSIERLKALRATPFEGTVDP 85
           SE  SS P+ +  V  +RF R AQ ++    +  SD +K Y IE+LK L AT F+G+ DP
Sbjct: 9   SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 68

Query: 86  VEAEVWLDLLEKCYRVM 103
            +AEVWL++LEKC+ VM
Sbjct: 69  ADAEVWLNMLEKCFDVM 85

The following BLAST results are available for this feature:
BLAST of Cla000636 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI31_CUCSA1.4e-0642.31Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
A0A0A0L7X2_CUCSA2.4e-0644.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1[more]
BLAST of Cla000636 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|3.2e-2054.81PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|1.8e-1851.92PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659095113|ref|XP_008448403.1|2.3e-1348.54PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|1.6e-1146.15PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659087174|ref|XP_008444312.1|6.8e-1048.05PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000636Cla000636.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla000636CSPI03G23540Wild cucumber (PI 183967)cpiwmB182
Cla000636CsaV3_3G023320Cucumber (Chinese Long) v3cucwmB191
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000636Watermelon (97103) v1wmwmB002