Csa3G426910 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G426910
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 20205576 .. 20206269 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGAATTTTGGTAGAGAATAGTCGAGGAGATGTTTGCTCGAAAGAATTCAAAGAAATCTTTAACAACAAATACTTCTCAAAGGCTTACAAGTCATAGTTCCCTCGACGTCGAAGTGCGTCGAGGAAGGTTATAGAAAATATCAGAAGATGGTCTCTCAATATTTTCCTCAATGTTGGGAATCCATGTCGAGAAAACTATTCCCGACGCACCTAGTACAACACGTCGGGAATGCCCTTTCCCCGACATTCATTATGCCAACGACAAAACGACATCGGGGACGTGTGGCTCTTCCGACGCAAAACTTAATGCTAGGAGATATGTTTTCCCGATGTGGCATCATGCGAGCTTTCCTCAATGCATACAAAATGGCATGGGGGAAAGGCTTATTTCTCGACGCAAATAG

mRNA sequence

ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTAGAATAGTCGAGGAGATGTTTGCTCGAAAGAATTCAAAGAAATCTTTAACAACAAATACTTCTCAAAGGCTTACAAGTCATAGTTCCCTCGACGTCGAAAAAACTATTCCCGACGCACCTAGTACAACACGTCGGGAATGCCCTTTCCCCGACATTCATTATGCCAACGACAAAACGACATCGGGGACGTGTGGCTCTTCCGACGCAAAACTTAATGCTAGGAGATATGTTTTCCCGATGTGGCATCATGCGAGCTTTCCTCAATGCATACAAAATGGCATGGGGGAAAGGCTTATTTCTCGACGCAAATAG

Coding sequence (CDS)

ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTAGAATAGTCGAGGAGATGTTTGCTCGAAAGAATTCAAAGAAATCTTTAACAACAAATACTTCTCAAAGGCTTACAAGTCATAGTTCCCTCGACGTCGAAAAAACTATTCCCGACGCACCTAGTACAACACGTCGGGAATGCCCTTTCCCCGACATTCATTATGCCAACGACAAAACGACATCGGGGACGTGTGGCTCTTCCGACGCAAAACTTAATGCTAGGAGATATGTTTTCCCGATGTGGCATCATGCGAGCTTTCCTCAATGCATACAAAATGGCATGGGGGAAAGGCTTATTTCTCGACGCAAATAG

Protein sequence

MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRRIVEEMFARKNSKKSLTTNTSQRLTSHSSLDVEKTIPDAPSTTRRECPFPDIHYANDKTTSGTCGSSDAKLNARRYVFPMWHHASFPQCIQNGMGERLISRRK*

Homology

[Close]

BLAST of Csa3G426910 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.4e-97
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


Query: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
           MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE
Sbjct: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61  EFEKWIRTLEKCFRRIVEEMFARKNSKKSLTTNTSQRLTSHSSLDVEKTIPDAPSTTRRE 120
           EFEKWIRTLEKCFRRIVEEMFARKNSKKSLTTNTSQRLTSHSSLDVEKTIPDAPSTTRRE
Sbjct: 61  EFEKWIRTLEKCFRRIVEEMFARKNSKKSLTTNTSQRLTSHSSLDVEKTIPDAPSTTRRE 120

Query: 121 CPFPDIHYANDKTTSGTCGSSDAKLNARRYVFPMWHHASFPQCIQNGMGERLISRRK 178
           CPFPDIHYANDKTTSGTCGSSDAKLNARRYVFPMWHHASFPQCIQNGMGERLISRRK
Sbjct: 121 CPFPDIHYANDKTTSGTCGSSDAKLNARRYVFPMWHHASFPQCIQNGMGERLISRRK 177

[Close]

BLAST of Csa3G426910 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 EFEKWIRTLEKCFR 75
          E EKWIRTLEKCFR
Sbjct: 65 EAEKWIRTLEKCFR 78

[Close]

BLAST of Csa3G426910 vs. TrEMBL
Match: A0A0A0KCZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 28 LVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR 75
          L++ ++ +PEKKFGIERLKAL A EFT   + E+ EKWIRTLEK FR
Sbjct: 8  LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFR 54

[Close]

BLAST of Csa3G426910 vs. NCBI nr
Match: gi|700202872|gb|KGN58005.1| (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.9e-97
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


Query: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
           MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE
Sbjct: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61  EFEKWIRTLEKCFRRIVEEMFARKNSKKSLTTNTSQRLTSHSSLDVEKTIPDAPSTTRRE 120
           EFEKWIRTLEKCFRRIVEEMFARKNSKKSLTTNTSQRLTSHSSLDVEKTIPDAPSTTRRE
Sbjct: 61  EFEKWIRTLEKCFRRIVEEMFARKNSKKSLTTNTSQRLTSHSSLDVEKTIPDAPSTTRRE 120

Query: 121 CPFPDIHYANDKTTSGTCGSSDAKLNARRYVFPMWHHASFPQCIQNGMGERLISRRK 178
           CPFPDIHYANDKTTSGTCGSSDAKLNARRYVFPMWHHASFPQCIQNGMGERLISRRK
Sbjct: 121 CPFPDIHYANDKTTSGTCGSSDAKLNARRYVFPMWHHASFPQCIQNGMGERLISRRK 177

[Close]

BLAST of Csa3G426910 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 6.9e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 EFEKWIRTLEKCFR 75
          E EKWIRTLEKCFR
Sbjct: 65 EAEKWIRTLEKCFR 78

[Close]

BLAST of Csa3G426910 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 3   SEAHSVNLNAMKEQKEVVYDRVTQRLVD-IMAHQ--PEKKFGIERLKALGATEFTGTTKP 62
           S+A S   +     +E + DR+ QRL+  I + Q  PEKK+GIERLKALGAT F GTT P
Sbjct: 47  SDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNP 106

Query: 63  EEFEKWIRTLEKCFR 75
            + E W+  +EKCFR
Sbjct: 107 ADAEAWLTLIEKCFR 121

[Close]

BLAST of Csa3G426910 vs. NCBI nr
Match: gi|700191515|gb|KGN46719.1| (hypothetical protein Csa_6G127310 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 28 LVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR 75
          L++ ++ +PEKKFGIERLKAL A EFT   + E+ EKWIRTLEK FR
Sbjct: 8  LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFR 54

The following BLAST results are available for this feature:

BLAST of Csa3G426910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7X2_CUCSA	1.4e-97	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1	[more]
A0A0A0LI31_CUCSA	4.8e-18	62.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1	[more]
A0A0A0KCZ4_CUCSA	2.9e-07	63.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1	[more]

BLAST of Csa3G426910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202872\|gb\|KGN58005.1\|	1.9e-97	100.00	hypothetical protein Csa_3G426910 [Cucumis sativus]	[more]
gi\|700206416\|gb\|KGN61535.1\|	6.9e-18	62.16	hypothetical protein Csa_2G163160 [Cucumis sativus]	[more]
gi\|659072264\|ref\|XP_008464580.1\|	2.6e-09	50.67	PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo]	[more]
gi\|700191515\|gb\|KGN46719.1\|	4.2e-07	63.83	hypothetical protein Csa_6G127310 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G426910.1	Csa3G426910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G426910	CSPI03G23540	Wild cucumber (PI 183967)	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G426910	Melon (DHL92) v3.5.1	cumeB208
Csa3G426910	Cucumber (Gy14) v2	cgybcuB109
Csa3G426910	Melon (DHL92) v3.6.1	cumedB196
Csa3G426910	Cucumber (Gy14) v1	cgycuB353