CSPI03G18790 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18790
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14394691 .. 14394955 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGTGTTGGACACGATAAAAAAGATGGTTTTAAACTATGGATTGGCAGTCTCTTTGCAAAAGAAGAATGTTGCTGGAGTTAGCAAGTGGAAGTGGAAGCATCTTGCTAAGGAGGATGCAGGAAATAGAGTACAGGAACGTAGGACATGATCAGTGGTACAAACCATGGTAATGGCAATGGCAACAGGAAGAAATGGAAAAGATAGGAAGAGGAACTTACTCCGATGAAGGAGGGATAACGGTGGTGGCAGCGAAGTAG

mRNA sequence

ATGGAGAAGGTGTTGGACACGATAAAAAAGATGGTTTTAAACTATGGATTGGCAGTCTCTTTGCAAAAGAAGAATGTTGCTGGAGTTAGCAAGTGGAAGTGGAAGCATCTTGCTAAGGAGGATGCAGGAAATAGAGAAGAAATGGAAAAGATAGGAAGAGGAACTTACTCCGATGAAGGAGGGATAACGGTGGTGGCAGCGAAGTAG

Coding sequence (CDS)

ATGGAGAAGGTGTTGGACACGATAAAAAAGATGGTTTTAAACTATGGATTGGCAGTCTCTTTGCAAAAGAAGAATGTTGCTGGAGTTAGCAAGTGGAAGTGGAAGCATCTTGCTAAGGAGGATGCAGGAAATAGAGAAGAAATGGAAAAGATAGGAAGAGGAACTTACTCCGATGAAGGAGGGATAACGGTGGTGGCAGCGAAGTAG
Homology
[Close]
BLAST of CSPI03G18790 vs. TrEMBL
Match: A0A0A0L9C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214040 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.0e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60
          MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG
Sbjct: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60

Query: 61 GITVVAAK 69
          GITVVAAK
Sbjct: 61 GITVVAAK 68

[Close]
BLAST of CSPI03G18790 vs. NCBI nr
Match: gi|700202431|gb|KGN57564.1| (hypothetical protein Csa_3G214040 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60
          MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG
Sbjct: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60

Query: 61 GITVVAAK 69
          GITVVAAK
Sbjct: 61 GITVVAAK 68

The following BLAST results are available for this feature:
BLAST of CSPI03G18790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9C2_CUCSA8.0e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214040 PE=4 SV=1[more]
BLAST of CSPI03G18790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202431|gb|KGN57564.1|1.2e-29100.00hypothetical protein Csa_3G214040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18790.1CSPI03G18790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G18790Csa3G214040Cucumber (Chinese Long) v2cpicuB120
CSPI03G18790CsaV3_3G018870Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18790Melon (DHL92) v3.6.1cpimedB233
CSPI03G18790Melon (DHL92) v3.6.1cpimedB239
CSPI03G18790Cucumber (Gy14) v2cgybcpiB110
CSPI03G18790Silver-seed gourdcarcpiB0068
CSPI03G18790Silver-seed gourdcarcpiB0405
CSPI03G18790Silver-seed gourdcarcpiB0685
CSPI03G18790Watermelon (97103) v2cpiwmbB211
CSPI03G18790Watermelon (97103) v2cpiwmbB221
CSPI03G18790Wax gourdcpiwgoB280
CSPI03G18790Wax gourdcpiwgoB283
CSPI03G18790Cucurbita pepo (Zucchini)cpecpiB394
CSPI03G18790Cucumber (Gy14) v1cgycpiB030
CSPI03G18790Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18790Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18790Cucurbita maxima (Rimu)cmacpiB713
CSPI03G18790Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18790Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18790Cucurbita moschata (Rifu)cmocpiB706
CSPI03G18790Melon (DHL92) v3.5.1cpimeB233
CSPI03G18790Melon (DHL92) v3.5.1cpimeB241
CSPI03G18790Watermelon (Charleston Gray)cpiwcgB228
CSPI03G18790Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18790Watermelon (97103) v1cpiwmB235
CSPI03G18790Watermelon (97103) v1cpiwmB242
CSPI03G18790Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18790Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18790Bottle gourd (USVL1VR-Ls)cpilsiB202
CSPI03G18790Bottle gourd (USVL1VR-Ls)cpilsiB209