CsaV3_3G018870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018870
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14550058 .. 14550323 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGTGTTGGACACGATAAAAAAGATGGTTTTAAACTATGGATTGGCAGTCTCTTTGCAAAAGAAGAATGTTGCTGGAGTTAGCAAGTGGAAGTGGAAGCATCTTGCTAAGGAGGATGCAGGAAATAGAGTACAGGAACGTAGGACATGATCAGTGGTACAAACCATGGTAATGGCAATGGCAACAAGGAAGAAATGGAAAAGATAGGAAGAGGAACTTACTCCGATGAAGGAGGGATAACGGTGGTGGCAGCGAAGTAG

mRNA sequence

ATGGAGAAGGTGTTGGACACGATAAAAAAGATGGTTTTAAACTATGGATTGGCAGTCTCTTTGCAAAAGAAGAATGTTGCTGGAGTTAGCAAGTGGAAGTGGAAGCATCTTGCTAAGGAGGATGCAGGAAATAGAGAAGAAATGGAAAAGATAGGAAGAGGAACTTACTCCGATGAAGGAGGGATAACGGTGGTGGCAGCGAAGTAG

Coding sequence (CDS)

ATGGAGAAGGTGTTGGACACGATAAAAAAGATGGTTTTAAACTATGGATTGGCAGTCTCTTTGCAAAAGAAGAATGTTGCTGGAGTTAGCAAGTGGAAGTGGAAGCATCTTGCTAAGGAGGATGCAGGAAATAGAGAAGAAATGGAAAAGATAGGAAGAGGAACTTACTCCGATGAAGGAGGGATAACGGTGGTGGCAGCGAAGTAG

Protein sequence

MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEGGITVVAAK
Homology
[Close]
BLAST of CsaV3_3G018870 vs. NCBI nr
Match: KGN57564.1 (hypothetical protein Csa_3G214040 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60
          MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG
Sbjct: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60

Query: 61 GITVVAAK 69
          GITVVAAK
Sbjct: 61 GITVVAAK 68

[Close]
BLAST of CsaV3_3G018870 vs. TrEMBL
Match: tr|A0A0A0L9C2|A0A0A0L9C2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214040 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60
          MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG
Sbjct: 1  MEKVLDTIKKMVLNYGLAVSLQKKNVAGVSKWKWKHLAKEDAGNREEMEKIGRGTYSDEG 60

Query: 61 GITVVAAK 69
          GITVVAAK
Sbjct: 61 GITVVAAK 68

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018870 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57564.12.2e-29100.00hypothetical protein Csa_3G214040 [Cucumis sativus][more]
BLAST of CsaV3_3G018870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L9C2|A0A0A0L9C2_CUCSA1.5e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214040 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018870.1CsaV3_3G018870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018870CSPI03G18790Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018870Silver-seed gourdcarcucB0070
CsaV3_3G018870Silver-seed gourdcarcucB0403
CsaV3_3G018870Silver-seed gourdcarcucB0687
CsaV3_3G018870Cucumber (Gy14) v2cgybcucB117
CsaV3_3G018870Cucumber (Gy14) v1cgycucB030
CsaV3_3G018870Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018870Cucurbita maxima (Rimu)cmacucB0386
CsaV3_3G018870Cucurbita maxima (Rimu)cmacucB0840
CsaV3_3G018870Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018870Cucurbita moschata (Rifu)cmocucB0383
CsaV3_3G018870Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018870Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018870Cucurbita moschata (Rifu)cmocucB0825
CsaV3_3G018870Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018870Cucurbita pepo (Zucchini)cpecucB0261
CsaV3_3G018870Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018870Cucurbita pepo (Zucchini)cpecucB0494
CsaV3_3G018870Bottle gourd (USVL1VR-Ls)cuclsiB224
CsaV3_3G018870Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018870Melon (DHL92) v3.5.1cucmeB240
CsaV3_3G018870Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018870Melon (DHL92) v3.6.1cucmedB240
CsaV3_3G018870Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018870Watermelon (Charleston Gray)cucwcgB228
CsaV3_3G018870Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G018870Watermelon (97103) v1cucwmB243
CsaV3_3G018870Watermelon (97103) v1cucwmB252
CsaV3_3G018870Watermelon (97103) v2cucwmbB209
CsaV3_3G018870Watermelon (97103) v2cucwmbB217
CsaV3_3G018870Wax gourdcucwgoB284
CsaV3_3G018870Wax gourdcucwgoB287