CSPI03G18620 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18620
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14252082 .. 14252414 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG

mRNA sequence

ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG

Coding sequence (CDS)

ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG
Homology
[Close]
BLAST of CSPI03G18620 vs. TrEMBL
Match: A0A0A0LAA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G208700 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60
           MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS
Sbjct: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60

Query: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 111
           NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP
Sbjct: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 110

[Close]
BLAST of CSPI03G18620 vs. NCBI nr
Match: gi|700202414|gb|KGN57547.1| (hypothetical protein Csa_3G208700 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60
           MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS
Sbjct: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60

Query: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 111
           NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP
Sbjct: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 110

The following BLAST results are available for this feature:
BLAST of CSPI03G18620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAA7_CUCSA1.6e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G208700 PE=4 SV=1[more]
BLAST of CSPI03G18620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202414|gb|KGN57547.1|2.3e-56100.00hypothetical protein Csa_3G208700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18620.1CSPI03G18620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G18620CsaV3_3G018680Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18620Melon (DHL92) v3.6.1cpimedB239
CSPI03G18620Cucumber (Gy14) v2cgybcpiB110
CSPI03G18620Silver-seed gourdcarcpiB0405
CSPI03G18620Silver-seed gourdcarcpiB0685
CSPI03G18620Watermelon (97103) v2cpiwmbB221
CSPI03G18620Wax gourdcpiwgoB283
CSPI03G18620Cucumber (Gy14) v1cgycpiB366
CSPI03G18620Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18620Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18620Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18620Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18620Cucumber (Chinese Long) v2cpicuB120
CSPI03G18620Melon (DHL92) v3.5.1cpimeB241
CSPI03G18620Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18620Watermelon (97103) v1cpiwmB242
CSPI03G18620Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18620Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18620Bottle gourd (USVL1VR-Ls)cpilsiB209