CsaV3_3G018680 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018680
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14398148 .. 14398480 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG

mRNA sequence

ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG

Coding sequence (CDS)

ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG

Protein sequence

MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRSNERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP
Homology
[Close]
BLAST of CsaV3_3G018680 vs. NCBI nr
Match: KGN57547.1 (hypothetical protein Csa_3G208700 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 4.5e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60
           MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS
Sbjct: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60

Query: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 111
           NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP
Sbjct: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 110

[Close]
BLAST of CsaV3_3G018680 vs. TrEMBL
Match: tr|A0A0A0LAA7|A0A0A0LAA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G208700 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60
           MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS
Sbjct: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60

Query: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 111
           NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP
Sbjct: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 110

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018680 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57547.14.5e-56100.00hypothetical protein Csa_3G208700 [Cucumis sativus][more]
BLAST of CsaV3_3G018680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018680 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAA7|A0A0A0LAA7_CUCSA3.0e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G208700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018680.1CsaV3_3G018680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018680CSPI03G18620Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018680Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018680Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018680Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018680Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018680Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018680Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G018680Watermelon (97103) v1cucwmB252
CsaV3_3G018680Watermelon (97103) v2cucwmbB217
CsaV3_3G018680Wax gourdcucwgoB287
CsaV3_3G018680Silver-seed gourdcarcucB0403
CsaV3_3G018680Silver-seed gourdcarcucB0687
CsaV3_3G018680Cucumber (Gy14) v2cgybcucB117
CsaV3_3G018680Cucumber (Gy14) v1cgycucB369
CsaV3_3G018680Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018680Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018680Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018680Cucurbita moschata (Rifu)cmocucB0814