CSPI03G18620.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI03G18620.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14252082 .. 14252414 (+)
Sequence length333
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG

mRNA sequence

ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG

Coding sequence (CDS)

ATGCAGACTGAAATCAAAGCATTAGTCATAGCCGGCATGGATTGGTATGATTTTTTTAAACTGGATGAAGGGACCATGAAGGTTAAAAGATGCATGACGGATGATAAGAAAAACAAAATTTCAAAAAAGGACCCTTGCGGTCAAAGCTCCTGCGATCACAGCTTTGGCAATGTGAGAAGTAATGAACGGCAAAGTGAGATAGGCGTCAAACACCTAAAGTTCAACAACATGGAAATTTCAAAACTCATTTTCATAATCCATCCGGTTCTAGAGCTCATTATGGAGGGAGATTCCAAAGGCAAAACTAAGACCAAGGAAAACGAAGCACCTTAG
Homology
[Close]
BLAST of CSPI03G18620.1 vs. TrEMBL
Match: A0A0A0LAA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G208700 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60
           MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS
Sbjct: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60

Query: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 111
           NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP
Sbjct: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 110

[Close]
BLAST of CSPI03G18620.1 vs. NCBI nr
Match: gi|700202414|gb|KGN57547.1| (hypothetical protein Csa_3G208700 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60
           MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS
Sbjct: 1   MQTEIKALVIAGMDWYDFFKLDEGTMKVKRCMTDDKKNKISKKDPCGQSSCDHSFGNVRS 60

Query: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 111
           NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP
Sbjct: 61  NERQSEIGVKHLKFNNMEISKLIFIIHPVLELIMEGDSKGKTKTKENEAP 110

The following BLAST results are available for this feature:
BLAST of CSPI03G18620.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18620.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAA7_CUCSA1.6e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G208700 PE=4 SV=1[more]
BLAST of CSPI03G18620.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202414|gb|KGN57547.1|2.3e-56100.00hypothetical protein Csa_3G208700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G18620CSPI03G18620gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G18620.1CSPI03G18620.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G18620.1.cds1CSPI03G18620.1.cds1CDS