CSPI03G17950 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G17950
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Autophagy protein 5
Location	Chr3 : 13610553 .. 13612906 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGGCGACGGCGACTGGCAAGGGGGTTGGTGTCCTAGTGGGGAGAATCGGAGAAAAGAGGGTGGAGTATGTGAAGCTTTTTGTTTTAAGAGAATTAAAAAGTATATAAACCTATAATTGTTGCTATTGGGCCGGACTAATGGGCCATTTCTATGGGTTTTTTTTCTCCAATCATGTATGGCTGCGTGCCGAAGCCGTGTCCCAAATTAAAAAAAAAAAAAATGGACATGCCAACTAGCATGTCGGAGACGTGTCAAGGCGTGTCGATGTGGGAAACGTGTCGGATGTCAAAAACGTGTCCGACACCGAAACTTGGCCATCTTGTCGGCACTTCTTAGACTACCAATAAGTAGTATGTTGTATGTTTACTATTGTATCTTAAAAATCCTCTAATTCCTTTTTATTTTTAAGTAGAACCTGAGATGGGGGGATTTGAACCTGGGATTTCTTGTCGTTAAGCTAAGCTCATGTTGGTAAAAGTCCTTTAGTTTCTTTCCATCCTTATCAGTCAAACAACAGCATTTTGATTAATTTTTTTAATAATTCCTCTTTCTTTGTTTACTCCAATAGTAATATTATTGGCAAGCGAGCTCAATTGGTTAGAGGGGTTAATCCTCCTTCTACGTCTCTTTATTGATTTGTATAGAAAGGTTTCCTATTTCTATTGTAAAAACAGGAACATAAATTATGTTGAAAATCCAATAAACCTAATATTAATGAAGAATGTAGAGGAAAATCCAATAGACTTTAATGTGTTCTTTTTCCTAATTTTTTTTGCTTGCAGTTGATTTAGAAGCCTATCTACGTATATCATCTAAACTTAAGCTTGGAGGAACTGGTCACGAGCATGTGTTGAAATCTATATCAACTGCATCATTGCCTGCTAAAAGTACTGGCGAGATGGATATAGCCCAATTAATAACAGGTATGACAACCACTTTTAGGCATTTCACTTTTGTGCTTCTACTCATAGATTCTTTGTCCTCGGCATCTATGTTTGCATATTGAAGATTTATTTTGTTGACACTTTTGCTCTTTGTTCGGATGGTTACATTTTGTACTATATTCCTAATAATTTGTGTCTTGACTATCTTCTATTCTTTCAAAAGACTTCTCCGTCTAGTGGAGAGTAATTTGCTGACATGTATTTTCTCTCGGAGGGGGAGAGTTGTTCCAAATTATTGTTTTGACTTCAAATGTGAGACGTTTTGGTTCTTATGCTAAAAAAATTCATTGACTTCAAATTAGTTATGTTTTATCATTCAACTTTGCTAATGGTATTGGATTTTCATCCTACATGTGGGTTTTATGTGTATGATTTTTAAATTTTCACTCACCTTTGTTACTCTCACCCCTCAAGTCTAATATTCATTTATACTATCATTTCACTTGCGTTTCTTACTACTTCAGCATGTCCAGGTCGAATTCCAGTTCGATTGTATGTAAGGAATTTAGGTGATGATTTTGATAATTTAGAAGATGCACCACCAGTTAACAACTGGGATGATGTCTCATACATTAATCGTCCTGTAGAGATCCGTGAAGAAGGTAAAGCAACGTGAACTATCACTTTTTGTTTTTAGGAACGGTCTATTATATGAGCACAGTGTTATTGGATGTGATTGACTAAGCGAGATTTATGCTGTCCAATTGATAAAAGAAAGACTAGAGGCCAATTTATAAACATGTAGAATTGAGTGTAGTTTGATTTTTCACGATCAGTCTGAGTTTCTGTGCTTTAAAAATATAGTTGTCATACTGGTTTAAGGTGTATATCCATCCATGACCACAAAGGTCAATAGTACAACGTCTAGGCATATTAAGAGATTTTCTTCCTCATCTCCGCACATTGCAGGTAAGTGCTTCACCTTACATGATGCTGTTAGGAGTCTGTTACCTGAGCTTTTTGCCGAAAAGGGGACTACCAAGGAGGAATCAACAAATGTTCTAAGTGAAGGACAAAGTGATAGTACAGAACAGTTGGATTGTACCAAAACAGAAGAAGGGGGATCAAATTTTTCTGAGGAATATTTCCAATCTTATCATCCTAGCATCAAGCTGGTTAGGATCCAAGGGATTGAACCAAAAGGCCAAATTCCTTTCTCCTGGGTAGTGAACAACTTAATGAATCCTGAATACTTCCTCCATATCTGTGTTTTTGTATCTGTTCAATAAGTCAGATGCTAAGTTATAGGACCAAAGAACAAGTAGGTATTTCCATTCTTTCATTTGTGGTGTGGGGAATTGGATTTTTTTTTTTATTATTATTATTATTGACATTCTTTTTAAAAGAATTATTCTGTAAAGTTGTACAGAAAGTAATGTTATCAATGTCTACAAGTAGTCACCCA

mRNA sequence

ATGGGCGGCGACGGCGACTGGCAAGGGGGTTGGTGTCCTAGTGGGGAGAATCGGAGAAAAGAGGGTGGACATGTCGGAGACGTGTCAAGGCGTGTCGATGTGGGAAACGTGTCGGATGTCAAAAACGTGTCCGACACCGAAACTTGGCCATCTTTTGATTTAGAAGCCTATCTACGTATATCATCTAAACTTAAGCTTGGAGGAACTGGTCACGAGCATGTGTTGAAATCTATATCAACTGCATCATTGCCTGCTAAAAGTACTGGCGAGATGGATATAGCCCAATTAATAACAGCATGTCCAGGTCGAATTCCAGTTCGATTGTATGTAAGGAATTTAGGTGATGATTTTGATAATTTAGAAGATGCACCACCAGTTAACAACTGGGATGATGTCTCATACATTAATCGTCCTGTAGAGATCCGTGAAGAAGGTAAGTGCTTCACCTTACATGATGCTGTTAGGAGTCTGTTACCTGAGCTTTTTGCCGAAAAGGGGACTACCAAGGAGGAATCAACAAATGTTCTAAGTGAAGGACAAAGTGATAGTACAGAACAGTTGGATTGTACCAAAACAGAAGAAGGGGGATCAAATTTTTCTGAGGAATATTTCCAATCTTATCATCCTAGCATCAAGCTGGTTAGGATCCAAGGGATTGAACCAAAAGGCCAAATTCCTTTCTCCTGGGTAGTGAACAACTTAATGAATCCTGAATACTTCCTCCATATCTGTGTTTTTGTATCTGTTCAATAA

Coding sequence (CDS)

ATGGGCGGCGACGGCGACTGGCAAGGGGGTTGGTGTCCTAGTGGGGAGAATCGGAGAAAAGAGGGTGGACATGTCGGAGACGTGTCAAGGCGTGTCGATGTGGGAAACGTGTCGGATGTCAAAAACGTGTCCGACACCGAAACTTGGCCATCTTTTGATTTAGAAGCCTATCTACGTATATCATCTAAACTTAAGCTTGGAGGAACTGGTCACGAGCATGTGTTGAAATCTATATCAACTGCATCATTGCCTGCTAAAAGTACTGGCGAGATGGATATAGCCCAATTAATAACAGCATGTCCAGGTCGAATTCCAGTTCGATTGTATGTAAGGAATTTAGGTGATGATTTTGATAATTTAGAAGATGCACCACCAGTTAACAACTGGGATGATGTCTCATACATTAATCGTCCTGTAGAGATCCGTGAAGAAGGTAAGTGCTTCACCTTACATGATGCTGTTAGGAGTCTGTTACCTGAGCTTTTTGCCGAAAAGGGGACTACCAAGGAGGAATCAACAAATGTTCTAAGTGAAGGACAAAGTGATAGTACAGAACAGTTGGATTGTACCAAAACAGAAGAAGGGGGATCAAATTTTTCTGAGGAATATTTCCAATCTTATCATCCTAGCATCAAGCTGGTTAGGATCCAAGGGATTGAACCAAAAGGCCAAATTCCTTTCTCCTGGGTAGTGAACAACTTAATGAATCCTGAATACTTCCTCCATATCTGTGTTTTTGTATCTGTTCAATAA

Homology

[Close]

BLAST of CSPI03G17950 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.6e-43
Identity = 104/221 (47.06%), Postives = 136/221 (61.54%), Query Frame = 1


Query: 35  GNVSDVKNVSDTET---WPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S ++    W S    DL+AY R+S KLK+G    E   K+  ++    +  
Sbjct: 136 GNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLKMGTVEDEFSRKTSLSSPQSQQVV 195

Query: 95  GEMDIA-QLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVE-IREEGK 154
            E ++A Q+ TA   RIPVRLYVR+L  DF+NLED P ++ WDD+SY+NRPVE ++EEGK
Sbjct: 196 PETEVAGQVKTA---RIPVRLYVRSLNKDFENLEDVPEIDTWDDISYLNRPVEFLKEEGK 255

Query: 155 CFTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQS 214
           CFTL DA++SLLPE   ++  T  E  ++      D TE+ D      G     E     
Sbjct: 256 CFTLRDAIKSLLPEFMGDRAQTSGEERSI------DDTEEAD------GSREMGE----- 315

Query: 215 YHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 248
               IKLVRIQGIE K +IPFSWVVNNLMNPE++LHI V V
Sbjct: 316 ----IKLVRIQGIEMKLEIPFSWVVNNLMNPEFYLHISVLV 332

[Close]

BLAST of CSPI03G17950 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 88/232 (37.93%), Postives = 130/232 (56.03%), Query Frame = 1


Query: 35  GNVSDVKNVSDTET---WPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S  +    W S    +L+ Y+ IS++LKLG    + ++++ S         
Sbjct: 146 GNSKNVMNMSQADQGALWQSVMKGNLDGYMNISTRLKLGPFEEDCLVRTSSVEGQQGSDE 205

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI-REEGKC 154
            E   +      P R+PVRLYVR++ +D  +LEDA PV +W+ +SYINRP E+ REEG+ 
Sbjct: 206 PESPGS----GKPCRVPVRLYVRSVQEDLYDLEDALPVGDWESISYINRPFEVRREEGRS 265

Query: 155 F-TLHDAVRSLLPELFAEKGT-------TKEESTNVLSEGQSDSTEQLDCTKTEEGGSNF 214
           + TL  A+++LLPE F+ K +       T  ++ +      SD T +  C K E   S+ 
Sbjct: 266 YITLEHALKTLLPEFFSSKASRIPDDSETAPQAPDSAPNDDSDVTPR-SCEKLESSASSS 325

Query: 215 SEE-YFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ 251
            +E    +    +KLVR+QGIE    IPF WV NNL NPE +LHICV+V  +
Sbjct: 326 PQEANVANKGKIVKLVRVQGIEVDMDIPFLWVANNLKNPECYLHICVYVGTR 372

[Close]

BLAST of CSPI03G17950 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 88/232 (37.93%), Postives = 130/232 (56.03%), Query Frame = 1


Query: 35  GNVSDVKNVSDTET---WPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S  +    W S    +L+ Y+ IS++LKLG    + ++++ S         
Sbjct: 146 GNSKNVMNMSQADQGALWQSVMKGNLDGYMNISTRLKLGPFEEDCLVRTSSVEGQQGSDE 205

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI-REEGKC 154
            E   +      P R+PVRLYVR++ +D  +LEDA PV +W+ +SYINRP E+ REEG+ 
Sbjct: 206 PESPGS----GKPCRVPVRLYVRSVQEDLYDLEDALPVGDWESISYINRPFEVRREEGRS 265

Query: 155 F-TLHDAVRSLLPELFAEKGT-------TKEESTNVLSEGQSDSTEQLDCTKTEEGGSNF 214
           + TL  A+++LLPE F+ K +       T  ++ +      SD T +  C K E   S+ 
Sbjct: 266 YITLEHALKTLLPEFFSSKASRIPDDSETAPQAPDSAPNDDSDVTPR-SCEKLESSASSS 325

Query: 215 SEE-YFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ 251
            +E    +    +KLVR+QGIE    IPF WV NNL NPE +LHICV+V  +
Sbjct: 326 PQEANVANKGKIVKLVRVQGIEVDMDIPFLWVANNLKNPECYLHICVYVGTR 372

[Close]

BLAST of CSPI03G17950 vs. TrEMBL
Match: A0A0A0L933_CUCSA (Autophagy protein 5 OS=Cucumis sativus GN=Csa_3G197940 PE=3 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 2.0e-134
Identity = 240/250 (96.00%), Postives = 242/250 (96.80%), Query Frame = 1


Query: 1   MGGDGDWQGGWCPSGENRRKEGGHVGDVSRRVDVGNVSDVKNVSDTETWPSFDLEAYLRI 60
           MGGD DWQ GWCP GENRRKEGGHVGDVSRRVDVGNVSDV+ VSDTETWPSFDLEAYLRI
Sbjct: 1   MGGDDDWQEGWCPGGENRRKEGGHVGDVSRRVDVGNVSDVRKVSDTETWPSFDLEAYLRI 60

Query: 61  SSKLKLGGTGHEHVLKSISTASLPAKSTGEMDIAQLITACPGRIPVRLYVRNLGDDFDNL 120
           SSKLKLGGTGHEHVLKSISTASLPAKSTGEMDIAQLIT   GRIPVRLYVRNLGDDFD+L
Sbjct: 61  SSKLKLGGTGHEHVLKSISTASLPAKSTGEMDIAQLIT---GRIPVRLYVRNLGDDFDHL 120

Query: 121 EDAPPVNNWDDVSYINRPVEIREEGKCFTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQ 180
           EDAPPVNNWDDVSYINRPVEIREEGKCFTLHDAVRSLLPELFAEKGTTKEESTNV SEGQ
Sbjct: 121 EDAPPVNNWDDVSYINRPVEIREEGKCFTLHDAVRSLLPELFAEKGTTKEESTNVPSEGQ 180

Query: 181 SDSTEQLDCTKTEEGGSNFSEEYFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYF 240
           SDSTEQLDCTKTEEGGSNFSEEYFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYF
Sbjct: 181 SDSTEQLDCTKTEEGGSNFSEEYFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYF 240

Query: 241 LHICVFVSVQ 251
           LHICVFVSVQ
Sbjct: 241 LHICVFVSVQ 247

[Close]

BLAST of CSPI03G17950 vs. TrEMBL
Match: F6HT40_VITVI (Autophagy protein 5 OS=Vitis vinifera GN=VIT_02s0012g02270 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.0e-47
Identity = 116/229 (50.66%), Postives = 147/229 (64.19%), Query Frame = 1


Query: 35  GNVSDVKNVSDT---ETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S +   E W S    ++EAY R+SSKLKL   G ++V K  S       +T
Sbjct: 141 GNCKNVMNMSQSDQMELWHSVLNGNMEAYQRVSSKLKLEKVGDQYVGKPNSNLLKSRTNT 200

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI-REEGKC 154
           GE D    +    GRIPVRLYV ++  DFD+LEDAP +++WD +SY+NRPVEI REE KC
Sbjct: 201 GETDTGGPVKT--GRIPVRLYVWSVSKDFDDLEDAPQIDSWDQISYMNRPVEIHREEDKC 260

Query: 155 FTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDS-TEQLDCTKTEEGGSNFSEEYFQS 214
           FTL DAV++LLPELF EK    EE + +  E +S + ++    T+ EE       E  + 
Sbjct: 261 FTLRDAVKALLPELFVEKTLIDEEISRIELEEESRAPSDDESNTRNEEDVEEKQRENVEC 320

Query: 215 YHPS------IKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSV 250
             PS      +KLVRIQGIEPK +IPFSWVVNNLMNPE+FLHICVFV V
Sbjct: 321 CCPSDDAETKLKLVRIQGIEPKLEIPFSWVVNNLMNPEHFLHICVFVKV 367

[Close]

BLAST of CSPI03G17950 vs. TrEMBL
Match: A5BWP9_VITVI (Autophagy protein 5 OS=Vitis vinifera GN=VITISV_004197 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 9.0e-47
Identity = 110/222 (49.55%), Postives = 143/222 (64.41%), Query Frame = 1


Query: 35  GNVSDVKNVSDT---ETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S +   E W S    ++E Y R+SSKLKL   G ++V K  S       +T
Sbjct: 136 GNCKNVMNMSQSDQVELWHSVLNGNMEXYQRVSSKLKLEKVGDQYVGKPNSNLLKSRTNT 195

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI-REEGKC 154
           GE D    +    GRIPVRLYV ++  DFD+LEDAP +++WD +SY+NRPVEI REE KC
Sbjct: 196 GETDTGGPVKT--GRIPVRLYVWSVSKDFDDLEDAPQIDSWDQISYMNRPVEIHREEDKC 255

Query: 155 FTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSY 214
           FTL DAV++LLPELF EK    EE +      +++  E+      +E  +   E+  +  
Sbjct: 256 FTLRDAVKALLPELFVEKTLIDEEIS------RTELEEESRAPSDDESNTRNEEDVEEKQ 315

Query: 215 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSV 250
             ++KLVRIQGIEPK +IPFSWVVNNLMNPE+FLHICVFV V
Sbjct: 316 RENLKLVRIQGIEPKLEIPFSWVVNNLMNPEHFLHICVFVKV 349

[Close]

BLAST of CSPI03G17950 vs. TrEMBL
Match: M5XBI8_PRUPE (Autophagy protein 5 OS=Prunus persica GN=PRUPE_ppa007660mg PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-46
Identity = 114/228 (50.00%), Postives = 143/228 (62.72%), Query Frame = 1


Query: 35  GNVSDVKNVSD---TETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S     E W S    +LE Y R+S+KLKLG  G E+  K           +
Sbjct: 136 GNCKNVMNMSQPDQVELWRSVLNGNLEPYRRVSTKLKLGTVGDEYAAK--------LNLS 195

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIR--EEGK 154
           GE D +  + A  GR+PVRLYV ++ +DF++LEDAP +++WD VSYINRPVEI+  E G+
Sbjct: 196 GETDFSGQVKA--GRVPVRLYVWSVSEDFEDLEDAPQIDSWDKVSYINRPVEIQGGEGGR 255

Query: 155 CFTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQS--DSTEQLDCTKTEEGGSNFSEEYF 214
           CFTLHDAV+SLLPE F +K  T EES  V  E +    S +     K EE   N SE   
Sbjct: 256 CFTLHDAVKSLLPEYFLDKSLTNEESLTVGDEHEQRVSSEDASSDRKAEEEVENSSEHIT 315

Query: 215 QSYH---PSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSV 250
             Y     +IKLVRIQGI PK +IPFSWV NNLMNPE+FLHICV++ V
Sbjct: 316 SCYQHDDAAIKLVRIQGIHPKLEIPFSWVANNLMNPEHFLHICVYLKV 353

[Close]

BLAST of CSPI03G17950 vs. TrEMBL
Match: V4U4U7_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-46
Identity = 110/222 (49.55%), Postives = 148/222 (66.67%), Query Frame = 1


Query: 35  GNVSDVKNVSDT---ETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S +   E W S    +LEAYLR+SSKLKL     ++ +K ++++S   + T
Sbjct: 136 GNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLVTVEDDYTVK-LNSSSKSQQGT 195

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIR-EEGKC 154
           GE D A  +    GRIPVRLYV ++ +DFD+LEDAP ++ WD +S+INRPVE+R EEGKC
Sbjct: 196 GETDFAGQVKT--GRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKC 255

Query: 155 FTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSY 214
           FTLHDA+++LLPE F +K    +ES  +  E  + S+E     K  E      E   ++ 
Sbjct: 256 FTLHDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRN- 315

Query: 215 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSV 250
              IKLVRIQGIEPK +IPFSWVVNNLMNP+YFL++C+ V V
Sbjct: 316 -AEIKLVRIQGIEPKLEIPFSWVVNNLMNPDYFLYMCICVRV 352

[Close]

BLAST of CSPI03G17950 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family)

HSP 1 Score: 175.6 bits (444), Expect = 3.7e-44
Identity = 104/221 (47.06%), Postives = 136/221 (61.54%), Query Frame = 1


Query: 35  GNVSDVKNVSDTET---WPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V N+S ++    W S    DL+AY R+S KLK+G    E   K+  ++    +  
Sbjct: 136 GNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLKMGTVEDEFSRKTSLSSPQSQQVV 195

Query: 95  GEMDIA-QLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVE-IREEGK 154
            E ++A Q+ TA   RIPVRLYVR+L  DF+NLED P ++ WDD+SY+NRPVE ++EEGK
Sbjct: 196 PETEVAGQVKTA---RIPVRLYVRSLNKDFENLEDVPEIDTWDDISYLNRPVEFLKEEGK 255

Query: 155 CFTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQS 214
           CFTL DA++SLLPE   ++  T  E  ++      D TE+ D      G     E     
Sbjct: 256 CFTLRDAIKSLLPEFMGDRAQTSGEERSI------DDTEEAD------GSREMGE----- 315

Query: 215 YHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 248
               IKLVRIQGIE K +IPFSWVVNNLMNPE++LHI V V
Sbjct: 316 ----IKLVRIQGIEMKLEIPFSWVVNNLMNPEFYLHISVLV 332

[Close]

BLAST of CSPI03G17950 vs. NCBI nr
Match: gi|700202346|gb|KGN57479.1| (hypothetical protein Csa_3G197940 [Cucumis sativus])

HSP 1 Score: 486.5 bits (1251), Expect = 2.8e-134
Identity = 240/250 (96.00%), Postives = 242/250 (96.80%), Query Frame = 1


Query: 1   MGGDGDWQGGWCPSGENRRKEGGHVGDVSRRVDVGNVSDVKNVSDTETWPSFDLEAYLRI 60
           MGGD DWQ GWCP GENRRKEGGHVGDVSRRVDVGNVSDV+ VSDTETWPSFDLEAYLRI
Sbjct: 1   MGGDDDWQEGWCPGGENRRKEGGHVGDVSRRVDVGNVSDVRKVSDTETWPSFDLEAYLRI 60

Query: 61  SSKLKLGGTGHEHVLKSISTASLPAKSTGEMDIAQLITACPGRIPVRLYVRNLGDDFDNL 120
           SSKLKLGGTGHEHVLKSISTASLPAKSTGEMDIAQLIT   GRIPVRLYVRNLGDDFD+L
Sbjct: 61  SSKLKLGGTGHEHVLKSISTASLPAKSTGEMDIAQLIT---GRIPVRLYVRNLGDDFDHL 120

Query: 121 EDAPPVNNWDDVSYINRPVEIREEGKCFTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQ 180
           EDAPPVNNWDDVSYINRPVEIREEGKCFTLHDAVRSLLPELFAEKGTTKEESTNV SEGQ
Sbjct: 121 EDAPPVNNWDDVSYINRPVEIREEGKCFTLHDAVRSLLPELFAEKGTTKEESTNVPSEGQ 180

Query: 181 SDSTEQLDCTKTEEGGSNFSEEYFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYF 240
           SDSTEQLDCTKTEEGGSNFSEEYFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYF
Sbjct: 181 SDSTEQLDCTKTEEGGSNFSEEYFQSYHPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYF 240

Query: 241 LHICVFVSVQ 251
           LHICVFVSVQ
Sbjct: 241 LHICVFVSVQ 247

[Close]

BLAST of CSPI03G17950 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 1.2e-105
Identity = 200/222 (90.09%), Postives = 205/222 (92.34%), Query Frame = 1


Query: 35  GNVSDVKNVSDT---ETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V ++S+    E W S    DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST
Sbjct: 134 GNTKNVMSMSEPDLLELWRSVSNVDLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 193

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIREEGKCF 154
           GEMDIAQLIT   GRIPVRLYVRNLGDDFD+LEDAPPVNNWDDVSYINRPVEIREEGKCF
Sbjct: 194 GEMDIAQLIT---GRIPVRLYVRNLGDDFDHLEDAPPVNNWDDVSYINRPVEIREEGKCF 253

Query: 155 TLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYH 214
           TLHDAVRSLLPELFAEKGTTKEESTNV SEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYH
Sbjct: 254 TLHDAVRSLLPELFAEKGTTKEESTNVPSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYH 313

Query: 215 PSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ 251
           PSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ
Sbjct: 314 PSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ 352

[Close]

BLAST of CSPI03G17950 vs. NCBI nr
Match: gi|778679952|ref|XP_011651221.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 1.2e-105
Identity = 200/222 (90.09%), Postives = 205/222 (92.34%), Query Frame = 1


Query: 35  GNVSDVKNVSDT---ETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V ++S+    E W S    DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST
Sbjct: 104 GNTKNVMSMSEPDLLELWRSVSNVDLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 163

Query: 95  GEMDIAQLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIREEGKCF 154
           GEMDIAQLIT   GRIPVRLYVRNLGDDFD+LEDAPPVNNWDDVSYINRPVEIREEGKCF
Sbjct: 164 GEMDIAQLIT---GRIPVRLYVRNLGDDFDHLEDAPPVNNWDDVSYINRPVEIREEGKCF 223

Query: 155 TLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYH 214
           TLHDAVRSLLPELFAEKGTTKEESTNV SEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYH
Sbjct: 224 TLHDAVRSLLPELFAEKGTTKEESTNVPSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSYH 283

Query: 215 PSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ 251
           PSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ
Sbjct: 284 PSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFVSVQ 322

[Close]

BLAST of CSPI03G17950 vs. NCBI nr
Match: gi|659112388|ref|XP_008456194.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo])

HSP 1 Score: 352.1 bits (902), Expect = 8.3e-94
Identity = 185/220 (84.09%), Postives = 193/220 (87.73%), Query Frame = 1


Query: 35  GNVSDVKNVSDT---ETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V ++S+    E W S    DLEAYLRISSKLKLGGTG EHVLKSIS ASLPAKS+
Sbjct: 104 GNTKNVMSMSEPDLLELWRSVSNVDLEAYLRISSKLKLGGTGLEHVLKSISAASLPAKSS 163

Query: 95  GEMDIA-QLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIREEGKC 154
           GEMDIA QLIT   GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI+EEGKC
Sbjct: 164 GEMDIAGQLIT---GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKC 223

Query: 155 FTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSY 214
           FTLHDAVRSLLPELF EK TTK+ESTNV+ E QSDSTEQLDCTKT EGGS  SEEY QSY
Sbjct: 224 FTLHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKT-EGGSTSSEEYLQSY 283

Query: 215 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 248
           HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 284 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 319

[Close]

BLAST of CSPI03G17950 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 352.1 bits (902), Expect = 8.3e-94
Identity = 185/220 (84.09%), Postives = 193/220 (87.73%), Query Frame = 1


Query: 35  GNVSDVKNVSDT---ETWPSF---DLEAYLRISSKLKLGGTGHEHVLKSISTASLPAKST 94
           GN  +V ++S+    E W S    DLEAYLRISSKLKLGGTG EHVLKSIS ASLPAKS+
Sbjct: 134 GNTKNVMSMSEPDLLELWRSVSNVDLEAYLRISSKLKLGGTGLEHVLKSISAASLPAKSS 193

Query: 95  GEMDIA-QLITACPGRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIREEGKC 154
           GEMDIA QLIT   GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEI+EEGKC
Sbjct: 194 GEMDIAGQLIT---GRIPVRLYVRNLGDDFDNLEDAPPVNNWDDVSYINRPVEIQEEGKC 253

Query: 155 FTLHDAVRSLLPELFAEKGTTKEESTNVLSEGQSDSTEQLDCTKTEEGGSNFSEEYFQSY 214
           FTLHDAVRSLLPELF EK TTK+ESTNV+ E QSDSTEQLDCTKT EGGS  SEEY QSY
Sbjct: 254 FTLHDAVRSLLPELFTEKATTKDESTNVIGEEQSDSTEQLDCTKT-EGGSTSSEEYLQSY 313

Query: 215 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 248
           HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV
Sbjct: 314 HPSIKLVRIQGIEPKGQIPFSWVVNNLMNPEYFLHICVFV 349

The following BLAST results are available for this feature:

BLAST of CSPI03G17950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATG5_ARATH	6.6e-43	47.06	Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1	[more]
ATG5_ORYSI	1.2e-31	37.93	Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2	[more]
ATG5_ORYSJ	1.2e-31	37.93	Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1	[more]

BLAST of CSPI03G17950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L933_CUCSA	2.0e-134	96.00	Autophagy protein 5 OS=Cucumis sativus GN=Csa_3G197940 PE=3 SV=1	[more]
F6HT40_VITVI	4.0e-47	50.66	Autophagy protein 5 OS=Vitis vinifera GN=VIT_02s0012g02270 PE=3 SV=1	[more]
A5BWP9_VITVI	9.0e-47	49.55	Autophagy protein 5 OS=Vitis vinifera GN=VITISV_004197 PE=3 SV=1	[more]
M5XBI8_PRUPE	1.2e-46	50.00	Autophagy protein 5 OS=Prunus persica GN=PRUPE_ppa007660mg PE=3 SV=1	[more]
V4U4U7_9ROSI	1.2e-46	49.55	Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1	[more]

BLAST of CSPI03G17950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17290.1	3.7e-44	47.06	autophagy protein Apg5 family	[more]

BLAST of CSPI03G17950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202346\|gb\|KGN57479.1\|	2.8e-134	96.00	hypothetical protein Csa_3G197940 [Cucumis sativus]	[more]
gi\|449446111\|ref\|XP_004140815.1\|	1.2e-105	90.09	PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus]	[more]
gi\|778679952\|ref\|XP_011651221.1\|	1.2e-105	90.09	PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus]	[more]
gi\|659112388\|ref\|XP_008456194.1\|	8.3e-94	84.09	PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo]	[more]
gi\|659112386\|ref\|XP_008456193.1\|	8.3e-94	84.09	PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007239	Atg5

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006914	autophagy

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006810	transport
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G17950.1	CSPI03G17950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007239	Autophagy-related protein 5	PANTHER	PTHR13040	AUTOPHAGY PROTEIN 5	coord: 51..249 score: 3.3
IPR007239	Autophagy-related protein 5	PFAM	PF04106	APG5	coord: 51..245 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G17950	Cla013118	Watermelon (97103) v1	cpiwmB242
CSPI03G17950	Csa3G197940	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G17950	Cucsa.108740	Cucumber (Gy14) v1	cgycpiB133

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G17950	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G17950	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G17950	Silver-seed gourd	carcpiB0203
CSPI03G17950	Silver-seed gourd	carcpiB0799
CSPI03G17950	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G17950	Watermelon (97103) v2	cpiwmbB221
CSPI03G17950	Wax gourd	cpiwgoB283
CSPI03G17950	Cucurbita maxima (Rimu)	cmacpiB247
CSPI03G17950	Cucurbita maxima (Rimu)	cmacpiB461
CSPI03G17950	Cucurbita moschata (Rifu)	cmocpiB235
CSPI03G17950	Cucurbita moschata (Rifu)	cmocpiB449
CSPI03G17950	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G17950	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G17950	Cucurbita pepo (Zucchini)	cpecpiB551
CSPI03G17950	Cucurbita pepo (Zucchini)	cpecpiB605
CSPI03G17950	Bottle gourd (USVL1VR-Ls)	cpilsiB209