CSPI03G17740 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G17740
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description40S ribosomal protein S19
LocationChr3 : 13312920 .. 13313306 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

mRNA sequence

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

Coding sequence (CDS)

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA
Homology
[Close]
BLAST of CSPI03G17740 vs. Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.4e-57
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

[Close]
BLAST of CSPI03G17740 vs. Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.5e-56
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.8e-56
Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.3e-52
Identity = 96/127 (75.59%), Postives = 110/127 (86.61%), Query Frame = 1 

Query: 2   ATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASM 61
           +TAR VKDV+PHEFVKAY+AHLKRS K+ELP W DIV TARFKEL  YD DWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IY G +RNGSRPPHFC+SSGAI R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 KRITSSG 129
           + ITS G
Sbjct: 124 RLITSQG 130

[Close]
BLAST of CSPI03G17740 vs. Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.0e-36
Identity = 64/122 (52.46%), Postives = 93/122 (76.23%), Query Frame = 1 

Query: 7   VKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIY 66
           VKDVS HEF +A+AA LK+S K+++P WTD V T  FKEL+ Y+ DWY++RAAS+ R +Y
Sbjct: 5   VKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLY 64

Query: 67  LRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGGKRITS 126
           +R   G+G+F++IY G +R G+ P HFC+++G+I R +LQ L+ + IV+ DP GG+R+TS
Sbjct: 65  IRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTS 124

Query: 127 SG 129
            G
Sbjct: 125 QG 126

[Close]
BLAST of CSPI03G17740 vs. TrEMBL
Match: A0A0A0L6V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187320 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. TrEMBL
Match: A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-63
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. TrEMBL
Match: A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-62
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. TrEMBL
Match: M5X6J8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.1e-59
Identity = 112/128 (87.50%), Postives = 119/128 (92.97%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS K+ELPPWTDIV T  FKELA YD DWYYVRAAS
Sbjct: 64  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGTFKELAPYDPDWYYVRAAS 123

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           +ARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFCESSGAI RHILQQLQ+MNIVD+DPKG
Sbjct: 124 IARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCESSGAIARHILQQLQKMNIVDLDPKG 183

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 184 GRRITSSG 191

[Close]
BLAST of CSPI03G17740 vs. TrEMBL
Match: B9H0J0_POPTR (40S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.9e-59
Identity = 109/128 (85.16%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAY+AHLKRS KVELPPWTDIV TA+FKELA YD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GS+RNGSRPPHFC+SSG++ RHILQQLQ MNI+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. TAIR10
Match: AT5G61170.1 (AT5G61170.1 Ribosomal protein S19e family protein)

HSP 1 Score: 221.5 bits (563), Expect = 3.1e-58
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

[Close]
BLAST of CSPI03G17740 vs. TAIR10
Match: AT3G02080.1 (AT3G02080.1 Ribosomal protein S19e family protein)

HSP 1 Score: 218.8 bits (556), Expect = 2.0e-57
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. TAIR10
Match: AT5G15520.1 (AT5G15520.1 Ribosomal protein S19e family protein)

HSP 1 Score: 217.6 bits (553), Expect = 4.4e-57
Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. NCBI nr
Match: gi|778679897|ref|XP_011651209.1| (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. NCBI nr
Match: gi|449462326|ref|XP_004148892.1| (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-63
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. NCBI nr
Match: gi|659100984|ref|XP_008451369.1| (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. NCBI nr
Match: gi|449447418|ref|XP_004141465.1| (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.3e-62
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CSPI03G17740 vs. NCBI nr
Match: gi|1009125758|ref|XP_015879782.1| (PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba])

HSP 1 Score: 242.7 bits (618), Expect = 3.6e-61
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQ MNI+D+DPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQNMNIIDIDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

The following BLAST results are available for this feature:
BLAST of CSPI03G17740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS193_ARATH5.4e-5780.4740S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1[more]
RS191_ARATH3.5e-5678.9140S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1[more]
RS192_ARATH7.8e-5679.6940S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1[more]
RS19_ORYSJ5.3e-5275.5940S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1[more]
RS19_MYAAR4.0e-3652.4640S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1[more]
BLAST of CSPI03G17740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6V0_CUCSA1.4e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187320 PE=4 SV=1[more]
A0A0A0K500_CUCSA1.2e-6395.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1[more]
A0A0A0KSI3_CUCSA2.3e-6292.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1[more]
M5X6J8_PRUPE3.1e-5987.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1[more]
B9H0J0_POPTR6.9e-5985.1640S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1[more]
BLAST of CSPI03G17740 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61170.13.1e-5880.47 Ribosomal protein S19e family protein[more]
AT3G02080.12.0e-5778.91 Ribosomal protein S19e family protein[more]
AT5G15520.14.4e-5779.69 Ribosomal protein S19e family protein[more]
BLAST of CSPI03G17740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679897|ref|XP_011651209.1|2.0e-67100.00PREDICTED: 40S ribosomal protein S19-3-like [Cucumis sativus][more]
gi|449462326|ref|XP_004148892.1|1.7e-6395.31PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus][more]
gi|659100984|ref|XP_008451369.1|2.5e-6293.75PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo][more]
gi|449447418|ref|XP_004141465.1|3.3e-6292.97PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus][more]
gi|1009125758|ref|XP_015879782.1|3.6e-6190.63PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001266Ribosomal_S19e
IPR011991Winged helix-turn-helix DNA-binding domain
IPR018277Ribosomal_S19e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G17740.1CSPI03G17740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 2..120
score: 3.0
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 4..128
score: 7.2
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 7..128
score: 1.8
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..128
score: 1.4
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 7..128
score: 6.35
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G17740Csa3G187320Cucumber (Chinese Long) v2cpicuB120
CSPI03G17740CsaV3_3G017840Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G17740Melon (DHL92) v3.5.1cpimeB241
CSPI03G17740Watermelon (Charleston Gray)cpiwcgB237
CSPI03G17740Watermelon (97103) v1cpiwmB242
CSPI03G17740Cucurbita pepo (Zucchini)cpecpiB551
CSPI03G17740Cucurbita pepo (Zucchini)cpecpiB605
CSPI03G17740Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G17740Melon (DHL92) v3.6.1cpimedB239
CSPI03G17740Cucumber (Gy14) v2cgybcpiB110
CSPI03G17740Silver-seed gourdcarcpiB0203
CSPI03G17740Silver-seed gourdcarcpiB0799
CSPI03G17740Watermelon (97103) v2cpiwmbB221
CSPI03G17740Wax gourdcpiwgoB283
CSPI03G17740Cucumber (Gy14) v1cgycpiB133
CSPI03G17740Cucurbita maxima (Rimu)cmacpiB247
CSPI03G17740Cucurbita maxima (Rimu)cmacpiB461
CSPI03G17740Cucurbita moschata (Rifu)cmocpiB235
CSPI03G17740Cucurbita moschata (Rifu)cmocpiB449