Csa3G187320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G187320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description40S ribosomal protein S19, putative; contains IPR001266 (Ribosomal protein S19e)
LocationChr3 : 13228227 .. 13228613 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

mRNA sequence

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

Coding sequence (CDS)

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

Protein sequence

MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGGKRITSSG*
Homology
[Close]
BLAST of Csa3G187320 vs. Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.1e-56
Identity = 103/128 (80.47%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

[Close]
BLAST of Csa3G187320 vs. Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-55
Identity = 101/128 (78.91%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.0e-55
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.0e-51
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 1 

Query: 2   ATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASM 61
           +TAR VKDV+PHEFVKAY+AHLKRS K+ELP W DIV TARFKEL  YD DWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IY G +RNGSRPPHFC+SSGAI R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 KRITSSG 129
           + ITS G
Sbjct: 124 RLITSQG 130

[Close]
BLAST of Csa3G187320 vs. Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-35
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 1 

Query: 7   VKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIY 66
           VKDVS HEF +A+AA LK+S K+++P WTD V T  FKEL+ Y+ DWY++RAAS+ R +Y
Sbjct: 5   VKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLY 64

Query: 67  LRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGGKRITS 126
           +R   G+G+F++IY G +R G+ P HFC+++G+I R +LQ L+ + IV+ DP GG+R+TS
Sbjct: 65  IRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTS 124

Query: 127 SG 129
            G
Sbjct: 125 QG 126

[Close]
BLAST of Csa3G187320 vs. TrEMBL
Match: A0A0A0L6V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187320 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.3e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

[Close]
BLAST of Csa3G187320 vs. TrEMBL
Match: A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.6e-63
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. TrEMBL
Match: A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.7e-62
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. TrEMBL
Match: M5X6J8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-58
Identity = 112/128 (87.50%), Postives = 119/128 (92.97%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS K+ELPPWTDIV T  FKELA YD DWYYVRAAS
Sbjct: 64  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGTFKELAPYDPDWYYVRAAS 123

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           +ARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFCESSGAI RHILQQLQ+MNIVD+DPKG
Sbjct: 124 IARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCESSGAIARHILQQLQKMNIVDLDPKG 183

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 184 GRRITSSG 191

[Close]
BLAST of Csa3G187320 vs. TrEMBL
Match: B9H0J0_POPTR (40S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-58
Identity = 109/128 (85.16%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAY+AHLKRS KVELPPWTDIV TA+FKELA YD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GS+RNGSRPPHFC+SSG++ RHILQQLQ MNI+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. TAIR10
Match: AT5G61170.1 (AT5G61170.1 Ribosomal protein S19e family protein)

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-57
Identity = 103/128 (80.47%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

[Close]
BLAST of Csa3G187320 vs. TAIR10
Match: AT3G02080.1 (AT3G02080.1 Ribosomal protein S19e family protein)

HSP 1 Score: 216.9 bits (551), Expect = 7.5e-57
Identity = 101/128 (78.91%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. TAIR10
Match: AT5G15520.1 (AT5G15520.1 Ribosomal protein S19e family protein)

HSP 1 Score: 215.7 bits (548), Expect = 1.7e-56
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. NCBI nr
Match: gi|778679897|ref|XP_011651209.1| (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 7.6e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

[Close]
BLAST of Csa3G187320 vs. NCBI nr
Match: gi|449462326|ref|XP_004148892.1| (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 6.6e-63
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. NCBI nr
Match: gi|659100984|ref|XP_008451369.1| (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 9.6e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. NCBI nr
Match: gi|449447418|ref|XP_004141465.1| (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-61
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of Csa3G187320 vs. NCBI nr
Match: gi|1009125758|ref|XP_015879782.1| (PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba])

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-60
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQ MNI+D+DPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQNMNIIDIDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

The following BLAST results are available for this feature:
BLAST of Csa3G187320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS193_ARATH2.1e-5680.4740S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1[more]
RS191_ARATH1.3e-5578.9140S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1[more]
RS192_ARATH3.0e-5579.6940S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1[more]
RS19_ORYSJ2.0e-5175.5940S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1[more]
RS19_MYAAR2.0e-3552.4640S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1[more]
BLAST of Csa3G187320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6V0_CUCSA5.3e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187320 PE=4 SV=1[more]
A0A0A0K500_CUCSA4.6e-6395.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1[more]
A0A0A0KSI3_CUCSA8.7e-6292.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1[more]
M5X6J8_PRUPE1.2e-5887.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1[more]
B9H0J0_POPTR2.6e-5885.1640S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1[more]
BLAST of Csa3G187320 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61170.11.2e-5780.47 Ribosomal protein S19e family protein[more]
AT3G02080.17.5e-5778.91 Ribosomal protein S19e family protein[more]
AT5G15520.11.7e-5679.69 Ribosomal protein S19e family protein[more]
BLAST of Csa3G187320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679897|ref|XP_011651209.1|7.6e-67100.00PREDICTED: 40S ribosomal protein S19-3-like [Cucumis sativus][more]
gi|449462326|ref|XP_004148892.1|6.6e-6395.31PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus][more]
gi|659100984|ref|XP_008451369.1|9.6e-6293.75PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo][more]
gi|449447418|ref|XP_004141465.1|1.2e-6192.97PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus][more]
gi|1009125758|ref|XP_015879782.1|1.4e-6090.63PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001266Ribosomal_S19e
IPR011991Winged helix-turn-helix DNA-binding domain
IPR018277Ribosomal_S19e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G187320.1Csa3G187320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 2..120
score: 3.0
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 4..128
score: 7.2
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 7..128
score: 1.8
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..128
score: 1.4
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 7..128
score: 6.35
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G187320CSPI03G17740Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G187320Cucurbita pepo (Zucchini)cpecuB550
Csa3G187320Cucurbita pepo (Zucchini)cpecuB603
Csa3G187320Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G187320Cucumber (Gy14) v2cgybcuB109
Csa3G187320Melon (DHL92) v3.6.1cumedB238
Csa3G187320Silver-seed gourdcarcuB0196
Csa3G187320Silver-seed gourdcarcuB0781
Csa3G187320Watermelon (97103) v2cuwmbB215
Csa3G187320Wax gourdcuwgoB283
Csa3G187320Cucumber (Gy14) v1cgycuB132
Csa3G187320Cucurbita maxima (Rimu)cmacuB245
Csa3G187320Cucurbita maxima (Rimu)cmacuB458
Csa3G187320Cucurbita moschata (Rifu)cmocuB232
Csa3G187320Cucurbita moschata (Rifu)cmocuB445
Csa3G187320Melon (DHL92) v3.5.1cumeB251
Csa3G187320Watermelon (Charleston Gray)cuwcgB230
Csa3G187320Watermelon (97103) v1cuwmB243