CsaV3_3G017840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G017840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description40S ribosomal protein S19, putative
Locationchr3 : 13446626 .. 13448865 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAATTGATAGGCCTCGTAACACCAAGGTGTACGTACACATAAGAGGAAAGAGAGAAAAGGGGTGTGTGATACGTGTAAGGGAATTGTTGAGTGGTGTGGGCTTATAGGAATATTGTTAGTTAGGGGCCAGTTATAGGAGTATTTATGGCGTGAGGTTGTAGGAGTGAATCATCTTTTTGCTATTTTCTCTTTGGTTGTAATAGCTGTCTGTAAGAAGCTTAGGATTGATTGGGGCTCTCGAATTCTCCTACTGTGTTGATAAATAAATTGTTTAGGCTAAGGCCTATCGATTTGGTATCATAGCAGTAAGATTTGGGCAGAGTGGTTAAGATGGAAGGTAGAGTAAGTGCGTTGGAGGAGAAGATGGAGGAAATCGATGACAACCAATCATGGTTGGATTCGAAGGTGGAGGCTAGATTTAAGGAAGCGAATGGGAGGTTCGTGGTAGTGAATGAGCAGATGAGTTTAGTGTTATCGCATTTGGATGTGTTAATGATCGTGGATTGACATCCTCGAAGAGAACAATGTCGGAAAAGGGAAAAAAATTGATGAATTCAATGCTAGACGATTAGGAGAATGAAGGAGAATGTAAGAGTGGAATTAATGCACCTGGAATTAAAGAGATACTATTGTTTGACATGAGGCCGAAGAAGTTGGAGGTGCCAATATTCAAAGGTGAAGTGAGTGAGAACCCCGATGGTGGGTTACACTGGGTAGAATGTTATTTTGTCGTAAATTGCTTGACGAAGAAGGGCAAGTTAGACGCATTAGTGTTGTGATTCGAAGGAGAGGTGCTCAAATGGTATCAATGGGAGGAAGATTGGCAGCCTGTGGGTAGTTGGTTACAATTTCATGAGCTGTTGTTGGATCGATTACTCCCGTTGAATGAAGTTGACTATTACGCACGTTTTATTAGGCTGCAACAAGAAATGATAGTAAGGGAGTACCTGTGAGACCTGTTTCTAATTTGAGTACAAGAAGAAAAATCTGACTAAGTGTTTTGAAACTTTGTGTTTTGGATAAGAGATGTGTTGAAGTAACACTTCGTGATAAGAAGTTGATGTTTGAATCAATCCACGGAAAGGATTGAGTGATAAAAATGTATATGGTTAAGTATAACTTTTGCGATTAAGAAGTTAGTTCGCGACGAAGTTGGGTAGTTCGCGAGAAGGGTTATGTGTTAAGGCCTTCGAAAGTTATGTTAAGTGGTTGAAGTTATTCTCGGAATGGTTAGACGAGAAGAAATGTTTGGTGAGAAAGTGTCAAATCTGATTTGACAGGGGTTAAAACGTGTAAGATTAAGAGTTTAAGCATGGTTAAGATAAATCTTGATTTTACAGGTGTAAAGTTTTAAGTAAGAGCTGACAATTGGACAAGGGTTTAAGGATGACTAATCCAGGTTAAAAGAGTAGTAGAAATACTGGATCTGGGTCATTAAGTAAAGGGGATTTTTGAGAAATTTTGAAGTGTTGAAGTGTTGCCGTTTTGGTTTCGTGAGAAGACTACGCGAGAAAGAAGAAGAAGAGATTTCCAGTTCTAAGGCTAAGTATTTGTGAGTGCTTTATTTCAAAGTGATCTTTTCTTTGAGTTTAAGAAAGGCGAAAACCCTATTTCAGCAATCAAAGCTTTTGCGGCCTTTGCTCACTGAATTCAACAACCATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGATGAGATCTCGATCAAGTTGCTACCGTATTGTTGTTGTCCCTTGATTGATCAATTACCTCTATTGTTAAATTAGAGACTTATGTTTTGCTGATGAGAAACAATTTCTTATGCGTCATTAAAATTTTGGATGTAGCTGTTGAAAGATTTTCCATATGAATATGCTTACTCTTGTTTTTTCATGGGTTTTGAAT

mRNA sequence

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

Coding sequence (CDS)

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

Protein sequence

MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGGKRITSSG
Homology
[Close]
BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_011651209.1 (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis sativus] >KGN57458.1 hypothetical protein Csa_3G187320 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 3.9e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_004148892.1 (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >KGN44820.1 hypothetical protein Csa_7G390010 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 3.4e-63
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_008451369.1 (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 4.9e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 4.9e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_004141465.1 (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >KGN52503.1 hypothetical protein Csa_5G638420 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 6.4e-62
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. TAIR10
Match: AT5G61170.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 221.5 bits (563), Expect = 3.1e-58
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. TAIR10
Match: AT3G02080.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 218.8 bits (556), Expect = 2.0e-57
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. TAIR10
Match: AT5G15520.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 217.6 bits (553), Expect = 4.4e-57
Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. Swiss-Prot
Match: sp|Q9FNP8|RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.5e-57
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. Swiss-Prot
Match: sp|Q9SGA6|RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.6e-56
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. Swiss-Prot
Match: sp|Q9LF30|RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.0e-56
Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. Swiss-Prot
Match: sp|P40978|RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.3e-52
Identity = 96/127 (75.59%), Postives = 110/127 (86.61%), Query Frame = 0 

Query: 2   ATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASM 61
           +TAR VKDV+PHEFVKAY+AHLKRS K+ELP W DIV TARFKEL  YD DWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IY G +RNGSRPPHFC+SSGAI R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 KRITSSG 129
           + ITS G
Sbjct: 124 RLITSQG 130

[Close]
BLAST of CsaV3_3G017840 vs. Swiss-Prot
Match: sp|Q94613|RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 64/122 (52.46%), Postives = 93/122 (76.23%), Query Frame = 0 

Query: 7   VKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIY 66
           VKDVS HEF +A+AA LK+S K+++P WTD V T  FKEL+ Y+ DWY++RAAS+ R +Y
Sbjct: 5   VKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLY 64

Query: 67  LRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGGKRITS 126
           +R   G+G+F++IY G +R G+ P HFC+++G+I R +LQ L+ + IV+ DP GG+R+TS
Sbjct: 65  IRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTS 124

Query: 127 SG 129
            G
Sbjct: 125 QG 126

[Close]
BLAST of CsaV3_3G017840 vs. TrEMBL
Match: tr|A0A0A0L6V0|A0A0A0L6V0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187320 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.6e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. TrEMBL
Match: tr|A0A0A0K500|A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.2e-63
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. TrEMBL
Match: tr|A0A1S3BRB2|A0A1S3BRB2_CUCME (40S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.2e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. TrEMBL
Match: tr|A0A1S3CB93|A0A1S3CB93_CUCME (40S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 4.2e-62
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]
BLAST of CsaV3_3G017840 vs. TrEMBL
Match: tr|A0A0A0KSI3|A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 4.2e-62
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0 

Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

The following BLAST results are available for this feature:
BLAST of CsaV3_3G017840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651209.13.9e-67100.00PREDICTED: 40S ribosomal protein S19-3-like [Cucumis sativus] >KGN57458.1 hypoth... [more]
XP_004148892.13.4e-6395.31PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >KGN44820.1 hypothetica... [more]
XP_008451369.14.9e-6293.75PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo][more]
XP_022954406.14.9e-6293.7540S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso... [more]
XP_004141465.16.4e-6292.97PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICT... [more]
BLAST of CsaV3_3G017840 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61170.13.1e-5880.47Ribosomal protein S19e family protein[more]
AT3G02080.12.0e-5778.91Ribosomal protein S19e family protein[more]
AT5G15520.14.4e-5779.69Ribosomal protein S19e family protein[more]
BLAST of CsaV3_3G017840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FNP8|RS193_ARATH5.5e-5780.4740S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1[more]
sp|Q9SGA6|RS191_ARATH3.6e-5678.9140S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1[more]
sp|Q9LF30|RS192_ARATH8.0e-5679.6940S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1[more]
sp|P40978|RS19_ORYSJ5.3e-5275.5940S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=... [more]
sp|Q94613|RS19_MYAAR4.1e-3652.4640S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1[more]
BLAST of CsaV3_3G017840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6V0|A0A0A0L6V0_CUCSA2.6e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187320 PE=4 SV=1[more]
tr|A0A0A0K500|A0A0A0K500_CUCSA2.2e-6395.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=4 SV=1[more]
tr|A0A1S3BRB2|A0A1S3BRB2_CUCME3.2e-6293.7540S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=4 SV... [more]
tr|A0A1S3CB93|A0A1S3CB93_CUCME4.2e-6292.9740S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=4 SV=1[more]
tr|A0A0A0KSI3|A0A0A0KSI3_CUCSA4.2e-6292.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR018277Ribosomal_S19e_CS
IPR038111Ribosomal_S19e_sf
IPR001266Ribosomal_S19e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G017840.1CsaV3_3G017840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..128
e-value: 1.4E-54
score: 197.3
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 7..128
e-value: 1.6E-46
score: 157.4
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 1..128
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 2..120
e-value: 3.0E-54
score: 529.0
IPR038111Ribosomal protein S19e domain superfamilyGENE3DG3DSA:1.10.10.2700coord: 1..128
e-value: 2.1E-52
score: 178.9
NoneNo IPR availablePANTHERPTHR11710:SF8SUBFAMILY NOT NAMEDcoord: 1..128
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 7..128

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G017840CSPI03G17740Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G017840Watermelon (97103) v2cucwmbB217
CsaV3_3G017840Wax gourdcucwgoB287
CsaV3_3G017840Silver-seed gourdcarcucB0203
CsaV3_3G017840Silver-seed gourdcarcucB0802
CsaV3_3G017840Cucumber (Gy14) v2cgybcucB117
CsaV3_3G017840Cucumber (Gy14) v1cgycucB137
CsaV3_3G017840Cucurbita maxima (Rimu)cmacucB0285
CsaV3_3G017840Cucurbita maxima (Rimu)cmacucB0550
CsaV3_3G017840Cucurbita moschata (Rifu)cmocucB0276
CsaV3_3G017840Cucurbita moschata (Rifu)cmocucB0535
CsaV3_3G017840Cucurbita pepo (Zucchini)cpecucB0689
CsaV3_3G017840Cucurbita pepo (Zucchini)cpecucB0753
CsaV3_3G017840Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G017840Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G017840Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G017840Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G017840Watermelon (97103) v1cucwmB252