CSPI03G06950 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G06950
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 6200839 .. 6201165 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

mRNA sequence

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Coding sequence (CDS)

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Homology

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BLAST of CSPI03G06950 vs. TrEMBL
Match: A0A0A0L6V7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115110 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-54
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

[Close]

BLAST of CSPI03G06950 vs. NCBI nr
Match: gi|700201189|gb|KGN56322.1| (hypothetical protein Csa_3G115110 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

The following BLAST results are available for this feature:

BLAST of CSPI03G06950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G06950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6V7_CUCSA	1.5e-54	98.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115110 PE=4 SV=1	[more]

BLAST of CSPI03G06950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G06950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201189\|gb\|KGN56322.1\|	2.1e-54	98.15	hypothetical protein Csa_3G115110 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G06950.1	CSPI03G06950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 107..108 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G06950	Csa3G115110	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G06950	CsaV3_3G007030	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G06950	CsGy3G007070	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G06950	Cucurbita pepo (Zucchini)	cpecpiB218
CSPI03G06950	Cucurbita pepo (Zucchini)	cpecpiB392
CSPI03G06950	Bottle gourd (USVL1VR-Ls)	cpilsiB197
CSPI03G06950	Melon (DHL92) v3.6.1	cpimedB232
CSPI03G06950	Silver-seed gourd	carcpiB0978
CSPI03G06950	Silver-seed gourd	carcpiB1054
CSPI03G06950	Watermelon (97103) v2	cpiwmbB184
CSPI03G06950	Wax gourd	cpiwgoB241
CSPI03G06950	Cucumber (Gy14) v1	cgycpiB383
CSPI03G06950	Cucurbita maxima (Rimu)	cmacpiB334
CSPI03G06950	Cucurbita maxima (Rimu)	cmacpiB710
CSPI03G06950	Cucurbita moschata (Rifu)	cmocpiB326
CSPI03G06950	Cucurbita moschata (Rifu)	cmocpiB703
CSPI03G06950	Melon (DHL92) v3.5.1	cpimeB242
CSPI03G06950	Watermelon (Charleston Gray)	cpiwcgB190