CsaV3_3G007030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G007030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 6332355 .. 6332681 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCTCTTCCGCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTCCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

mRNA sequence

ATGGAAAAGCTCTTCCGCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTCCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Coding sequence (CDS)

ATGGAAAAGCTCTTCCGCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTCCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Protein sequence

MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV

Homology

[Close]

BLAST of CsaV3_3G007030 vs. NCBI nr
Match: KGN56322.1 (hypothetical protein Csa_3G115110 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

[Close]

BLAST of CsaV3_3G007030 vs. TrEMBL
Match: tr|A0A0A0L6V7|A0A0A0L6V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115110 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

The following BLAST results are available for this feature:

BLAST of CsaV3_3G007030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56322.1	1.7e-55	100.00	hypothetical protein Csa_3G115110 [Cucumis sativus]	[more]

BLAST of CsaV3_3G007030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G007030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G007030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6V7\|A0A0A0L6V7_CUCSA	1.1e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115110 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G007030.1	CsaV3_3G007030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G007030	CSPI03G06950	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G007030	CsGy3G007070	Cucumber (Gy14) v2	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G007030	Silver-seed gourd	carcucB0980
CsaV3_3G007030	Silver-seed gourd	carcucB1060
CsaV3_3G007030	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G007030	Cucurbita maxima (Rimu)	cmacucB0382
CsaV3_3G007030	Cucurbita maxima (Rimu)	cmacucB0837
CsaV3_3G007030	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G007030	Cucurbita moschata (Rifu)	cmocucB0380
CsaV3_3G007030	Cucurbita moschata (Rifu)	cmocucB0822
CsaV3_3G007030	Cucurbita pepo (Zucchini)	cpecucB0258
CsaV3_3G007030	Cucurbita pepo (Zucchini)	cpecucB0491
CsaV3_3G007030	Cucurbita pepo (Zucchini)	cpecucB1058
CsaV3_3G007030	Bottle gourd (USVL1VR-Ls)	cuclsiB217
CsaV3_3G007030	Melon (DHL92) v3.5.1	cucmeB248
CsaV3_3G007030	Melon (DHL92) v3.6.1	cucmedB239
CsaV3_3G007030	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G007030	Watermelon (97103) v2	cucwmbB182
CsaV3_3G007030	Wax gourd	cucwgoB244