CSPI03G06950.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G06950.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 6200839 .. 6201165 (+)
Sequence length	327

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

mRNA sequence

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Coding sequence (CDS)

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Homology

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BLAST of CSPI03G06950.1 vs. TrEMBL
Match: A0A0A0L6V7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115110 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-54
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

[Close]

BLAST of CSPI03G06950.1 vs. NCBI nr
Match: gi|700201189|gb|KGN56322.1| (hypothetical protein Csa_3G115110 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

The following BLAST results are available for this feature:

BLAST of CSPI03G06950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G06950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6V7_CUCSA	1.5e-54	98.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115110 PE=4 SV=1	[more]

BLAST of CSPI03G06950.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G06950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201189\|gb\|KGN56322.1\|	2.1e-54	98.15	hypothetical protein Csa_3G115110 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G06950	CSPI03G06950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G06950.1	CSPI03G06950.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G06950.1.cds1	CSPI03G06950.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 107..108 scor