CSPI03G00140 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G00140
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RING-H2 finger protein ATL1R
Location	Chr3 : 142172 .. 142711 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCCTATATCAGAGCTCTCACCGCAAATACTTCGTCGGCGCCTCCACCGGAAGCGGTGGCCTTGGAGTCGGACTTCGTGGTCATTCTCGCGGCTTTGCTCTGTGCCCTAATTTGTATGGTAGGGTTGATAGCGGTGGCTCGGTGCGCCTGGCTCCGCCGTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATACTGCAGTCGCTTCCGAAATTCAGGTACAAGTCAACGGTGGGAGATGGGAAAATAGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCTTGGAGGGGGAGGAGATCCGACAGTTGCCGCAGTGCGGGCATTGCTTCCACGTCAGTTGCGTAGACACGTGGCTAGGTACCCACTCCTCCTGCCCTTCTTGCCGTCAGATACTGGTAGTGGCCAGATGTCAGAAGTGCGGCCAGTTTCCGGCGGATGTACAAGGCGGCGGTGCTCACAACAACGAGGAGGAGGAAGTGGAAGATAACAACAACAACAACAACAGGGGTTTGGGGTTTTTGCCTTGA

mRNA sequence

ATGTCTCCCTATATCAGAGCTCTCACCGCAAATACTTCGTCGGCGCCTCCACCGGAAGCGGTGGCCTTGGAGTCGGACTTCGTGGTCATTCTCGCGGCTTTGCTCTGTGCCCTAATTTGTATGGTAGGGTTGATAGCGGTGGCTCGGTGCGCCTGGCTCCGCCGTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATACTGCAGTCGCTTCCGAAATTCAGGTACAAGTCAACGGTGGGAGATGGGAAAATAGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCTTGGAGGGGGAGGAGATCCGACAGTTGCCGCAGTGCGGGCATTGCTTCCACGTCAGTTGCGTAGACACGTGGCTAGGTACCCACTCCTCCTGCCCTTCTTGCCGTCAGATACTGGTAGTGGCCAGATGTCAGAAGTGCGGCCAGTTTCCGGCGGATGTACAAGGCGGCGGTGCTCACAACAACGAGGAGGAGGAAGTGGAAGATAACAACAACAACAACAACAGGGGTTTGGGGTTTTTGCCTTGA

Coding sequence (CDS)

ATGTCTCCCTATATCAGAGCTCTCACCGCAAATACTTCGTCGGCGCCTCCACCGGAAGCGGTGGCCTTGGAGTCGGACTTCGTGGTCATTCTCGCGGCTTTGCTCTGTGCCCTAATTTGTATGGTAGGGTTGATAGCGGTGGCTCGGTGCGCCTGGCTCCGCCGTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATACTGCAGTCGCTTCCGAAATTCAGGTACAAGTCAACGGTGGGAGATGGGAAAATAGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCTTGGAGGGGGAGGAGATCCGACAGTTGCCGCAGTGCGGGCATTGCTTCCACGTCAGTTGCGTAGACACGTGGCTAGGTACCCACTCCTCCTGCCCTTCTTGCCGTCAGATACTGGTAGTGGCCAGATGTCAGAAGTGCGGCCAGTTTCCGGCGGATGTACAAGGCGGCGGTGCTCACAACAACGAGGAGGAGGAAGTGGAAGATAACAACAACAACAACAACAGGGGTTTGGGGTTTTTGCCTTGA

Homology

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BLAST of CSPI03G00140 vs. Swiss-Prot
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-44
Identity = 101/188 (53.72%), Postives = 121/188 (64.36%), Query Frame = 1


Query: 13  SSAPPP----EAVALESDFVVILAALLCALICMVGLIAVARCAWLRR---GNQ------- 72
           S+ P P       AL SD VVILAALLCALIC++GLIAV+RC WLRR   GN+       
Sbjct: 12  SNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQT 71

Query: 73  -------ASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCG 132
                  A+AN+GLKKK+LQSLPK  +     + +  AECAICLAEF  G+E+R LPQCG
Sbjct: 72  QSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCG 131

Query: 133 HCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNNNN 180
           H FHV+C+DTWLG+HSSCPSCRQILVVARC KCG  P      G  +  E E+      +
Sbjct: 132 HGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGS-SSSGLESEPEIEIRIKQGED 191

[Close]

BLAST of CSPI03G00140 vs. Swiss-Prot
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43
Identity = 93/177 (52.54%), Postives = 114/177 (64.41%), Query Frame = 1


Query: 6   RALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR------GNQ- 65
           R L    S++P   +    SD V+ILA LLCAL C++GLIAV+RCAWLRR       +Q 
Sbjct: 7   RLLQEANSTSPAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQT 66

Query: 66  -----ASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHC 125
                A+AN+GLKKK+L+SLPK  Y       +   ECAICL EF  G+E+R LPQCGH 
Sbjct: 67  HPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHG 126

Query: 126 FHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNNN 171
           FHVSC+DTWLG+HSSCPSCRQILVV RC KCG  P     G   +   ++ ED  +N
Sbjct: 127 FHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of CSPI03G00140 vs. Swiss-Prot
Match: ATL45_ARATH (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-40
Identity = 87/158 (55.06%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 12  TSSAPPPEAV-ALESDFVVILAALLCALICMVGLIAVARCAWLRR---------GNQASA 71
           T+S PPPE + A E+D VVIL+ALLCAL+C+ GL AVARCAWLRR         G     
Sbjct: 10  TASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP 69

Query: 72  NRGLKKKILQSLPKFRYK--------------STVGDGKIAAECAICLAEFLEGEEIRQL 131
           N+GLKKK LQ+LPK  Y               S+VGDG  + ECAIC+ EF EGEEIR L
Sbjct: 70  NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRIL 129

Query: 132 PQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCG 146
           P C H FHV+C+D WL + SSCPSCR+ILV  +C +CG
Sbjct: 130 PLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

[Close]

BLAST of CSPI03G00140 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-39
Identity = 86/165 (52.12%), Postives = 105/165 (63.64%), Query Frame = 1


Query: 13  SSAPPP----EAVALESDFVVILAALLCALICMVGLIAVARCAWLRR----GNQASANRG 72
           ++APPP    E +A ESD VVIL+ALLCALIC+ GL AV RCAWLRR    G+  S N+G
Sbjct: 10  TAAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDSPSPNKG 69

Query: 73  LKKKILQSLPKFRYKSTVGDGKIAA------ECAICLAEFLEGEEIRQLPQCGHCFHVSC 132
           LKKK LQSLP+  + +       AA      ECAICL +F +GEEIR LP CGH FHV C
Sbjct: 70  LKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVEC 129

Query: 133 VDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEE 164
           +D WL + SSCPSCR+IL   RC +CG          AH ++  +
Sbjct: 130 IDKWLVSRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQ 174

[Close]

BLAST of CSPI03G00140 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-24
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 24  ESDFVVILAALLCALICMVGLIAVARCAWLRRGNQASANR---------GLKKKILQSLP 83
           +++ V+ILAALLCALI  +GL ++ RCA +R G   S++          GLKK+ L+  P
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCA-MRCGFGLSSSAAAGTVADRAGLKKRELKKFP 90

Query: 84  KFRYKSTVGDGKIAA-ECAICLAEFLEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPSCR 138
              Y S  G+ KIAA ECAICL EF +GE +R LP C H FH+SC+DTWL +HSSCP+CR
Sbjct: 91  VAEYGS--GEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCR 150

[Close]

BLAST of CSPI03G00140 vs. TrEMBL
Match: A0A0A0L622_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000150 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.6e-96
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 1


Query: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS 60
           MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS
Sbjct: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS 60

Query: 61  ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 120
           ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD
Sbjct: 61  ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 120

Query: 121 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVED--NNNNNNRGLGFL 180
           TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVED  NNNNNNRGLGFL
Sbjct: 121 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNINNNNNNRGLGFL 180

[Close]

BLAST of CSPI03G00140 vs. TrEMBL
Match: A0A067L9A2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22415 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 129/209 (61.72%), Postives = 146/209 (69.86%), Query Frame = 1


Query: 1   MSPYIRALTA--NTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQ 60
           M  + R LT+  +T  A PPEAV +ESDFVVILAALLCALIC+VGLIAVARCAWLRRG+ 
Sbjct: 1   MPRFPRMLTSLDSTPVADPPEAVNVESDFVVILAALLCALICVVGLIAVARCAWLRRGSG 60

Query: 61  AS-----------ANRGLKKKILQSLPKFRYKSTVGDG----KIAA-ECAICLAEFLEGE 120
            S           AN+GLKKKI+QSLPKF Y +T   G    K A+ ECAICL EF EG+
Sbjct: 61  GSTSRSTSQAAAVANKGLKKKIVQSLPKFTYGATAAGGGSSCKFASTECAICLGEFAEGD 120

Query: 121 EIRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPA--DVQGGGAHNNE 180
           E+R LPQCGH FHV C+DTWLG+HSSCPSCRQILVVARCQKCGQFPA    +GG A    
Sbjct: 121 EVRILPQCGHGFHVGCIDTWLGSHSSCPSCRQILVVARCQKCGQFPAISSGRGGPAAETN 180

[Close]

BLAST of CSPI03G00140 vs. TrEMBL
Match: I1LIC9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G087600 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 114/171 (66.67%), Postives = 132/171 (77.19%), Query Frame = 1


Query: 9   TANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGN-------QASA 68
           TA  ++APPPEAVALESDFVVILAALLCALIC+VGL+AVARCAWLRRG+       QA A
Sbjct: 15  TAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSGAGNSPRQALA 74

Query: 69  NRGLKKKILQSLPKFRYKSTVGDGKIA-AECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 128
           N+GLKKK+LQSLPKF Y  +     +A +ECAICLAEF  G+EIR LPQCGH FHV C+D
Sbjct: 75  NKGLKKKVLQSLPKFAYVDSNPSKWLATSECAICLAEFAAGDEIRVLPQCGHGFHVPCID 134

Query: 129 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNNNN 172
           TWLG+HSSCPSCRQ+L VARCQKCG+FPA   G       E E++   +NN
Sbjct: 135 TWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGASRTPATEPELKSREDNN 185

[Close]

BLAST of CSPI03G00140 vs. TrEMBL
Match: M5VR28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011201mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.1e-54
Identity = 108/150 (72.00%), Postives = 123/150 (82.00%), Query Frame = 1


Query: 14  SAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGN----------QASANR 73
           +APPPEAV LESDFVVILAALLCA+IC++GL+AVARCAWLRRG+          QASAN+
Sbjct: 21  AAPPPEAVVLESDFVVILAALLCAVICVIGLLAVARCAWLRRGSGAGGASLSSAQASANK 80

Query: 74  GLKKKILQSLPKFRYKSTVGDG--KIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVDT 133
           G+KKK+LQSLPKF Y     +   K+A+ECAICL EF EG+EIR LPQCGH FHV CVD 
Sbjct: 81  GVKKKVLQSLPKFTYGIGGAEPPPKLASECAICLGEFAEGDEIRVLPQCGHVFHVGCVDM 140

Query: 134 WLGTHSSCPSCRQILVVARCQKCGQFPADV 152
           WLG+HSSCPSCRQILVVARCQKCGQFPA +
Sbjct: 141 WLGSHSSCPSCRQILVVARCQKCGQFPAPI 170

[Close]

BLAST of CSPI03G00140 vs. TrEMBL
Match: A0A0S3T407_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G139300 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.7e-53
Identity = 116/184 (63.04%), Postives = 132/184 (71.74%), Query Frame = 1


Query: 9   TANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRG-------NQASA 68
           TA   +APPPEAVALESDFVVILAALLCALIC+VGL+AVARCAWLRRG        QA  
Sbjct: 15  TAVAGAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGGGNSPRQAVV 74

Query: 69  NRGLKKKILQSLPKFRYKSTVGDGKIAA-ECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 128
           N+GLKKK+LQSLP+F Y  +     +A  ECAICL +F  G+EIR LPQCGH FHVSC+D
Sbjct: 75  NKGLKKKVLQSLPRFAYVDSNPSKWVATTECAICLGDFAPGDEIRVLPQCGHGFHVSCID 134

Query: 129 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNN--------NNNN 177
            WLG+HSSCPSCRQ+L VARCQKCG+FPA     GA   E +  ED+N        NNN 
Sbjct: 135 RWLGSHSSCPSCRQVLAVARCQKCGRFPATASRSGASEPELKSREDSNAASISNCSNNNG 194

[Close]

BLAST of CSPI03G00140 vs. TAIR10
Match: AT1G20823.1 (AT1G20823.1 RING/U-box superfamily protein)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-45
Identity = 101/188 (53.72%), Postives = 121/188 (64.36%), Query Frame = 1


Query: 13  SSAPPP----EAVALESDFVVILAALLCALICMVGLIAVARCAWLRR---GNQ------- 72
           S+ P P       AL SD VVILAALLCALIC++GLIAV+RC WLRR   GN+       
Sbjct: 12  SNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQT 71

Query: 73  -------ASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCG 132
                  A+AN+GLKKK+LQSLPK  +     + +  AECAICLAEF  G+E+R LPQCG
Sbjct: 72  QSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCG 131

Query: 133 HCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNNNN 180
           H FHV+C+DTWLG+HSSCPSCRQILVVARC KCG  P      G  +  E E+      +
Sbjct: 132 HGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGS-SSSGLESEPEIEIRIKQGED 191

[Close]

BLAST of CSPI03G00140 vs. TAIR10
Match: AT1G76410.1 (AT1G76410.1 RING/U-box superfamily protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 93/177 (52.54%), Postives = 114/177 (64.41%), Query Frame = 1


Query: 6   RALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR------GNQ- 65
           R L    S++P   +    SD V+ILA LLCAL C++GLIAV+RCAWLRR       +Q 
Sbjct: 7   RLLQEANSTSPAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQT 66

Query: 66  -----ASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHC 125
                A+AN+GLKKK+L+SLPK  Y       +   ECAICL EF  G+E+R LPQCGH 
Sbjct: 67  HPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHG 126

Query: 126 FHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNNN 171
           FHVSC+DTWLG+HSSCPSCRQILVV RC KCG  P     G   +   ++ ED  +N
Sbjct: 127 FHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of CSPI03G00140 vs. TAIR10
Match: AT4G35480.1 (AT4G35480.1 RING-H2 finger A3B)

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-41
Identity = 87/158 (55.06%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 12  TSSAPPPEAV-ALESDFVVILAALLCALICMVGLIAVARCAWLRR---------GNQASA 71
           T+S PPPE + A E+D VVIL+ALLCAL+C+ GL AVARCAWLRR         G     
Sbjct: 10  TASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP 69

Query: 72  NRGLKKKILQSLPKFRYK--------------STVGDGKIAAECAICLAEFLEGEEIRQL 131
           N+GLKKK LQ+LPK  Y               S+VGDG  + ECAIC+ EF EGEEIR L
Sbjct: 70  NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRIL 129

Query: 132 PQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCG 146
           P C H FHV+C+D WL + SSCPSCR+ILV  +C +CG
Sbjct: 130 PLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

[Close]

BLAST of CSPI03G00140 vs. TAIR10
Match: AT2G17450.1 (AT2G17450.1 RING-H2 finger A3A)

HSP 1 Score: 162.5 bits (410), Expect = 2.4e-40
Identity = 86/165 (52.12%), Postives = 105/165 (63.64%), Query Frame = 1


Query: 13  SSAPPP----EAVALESDFVVILAALLCALICMVGLIAVARCAWLRR----GNQASANRG 72
           ++APPP    E +A ESD VVIL+ALLCALIC+ GL AV RCAWLRR    G+  S N+G
Sbjct: 10  TAAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDSPSPNKG 69

Query: 73  LKKKILQSLPKFRYKSTVGDGKIAA------ECAICLAEFLEGEEIRQLPQCGHCFHVSC 132
           LKKK LQSLP+  + +       AA      ECAICL +F +GEEIR LP CGH FHV C
Sbjct: 70  LKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVEC 129

Query: 133 VDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEE 164
           +D WL + SSCPSCR+IL   RC +CG          AH ++  +
Sbjct: 130 IDKWLVSRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQ 174

[Close]

BLAST of CSPI03G00140 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-25
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 24  ESDFVVILAALLCALICMVGLIAVARCAWLRRGNQASANR---------GLKKKILQSLP 83
           +++ V+ILAALLCALI  +GL ++ RCA +R G   S++          GLKK+ L+  P
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCA-MRCGFGLSSSAAAGTVADRAGLKKRELKKFP 90

Query: 84  KFRYKSTVGDGKIAA-ECAICLAEFLEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPSCR 138
              Y S  G+ KIAA ECAICL EF +GE +R LP C H FH+SC+DTWL +HSSCP+CR
Sbjct: 91  VAEYGS--GEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCR 150

[Close]

BLAST of CSPI03G00140 vs. NCBI nr
Match: gi|449456961|ref|XP_004146217.1| (PREDICTED: RING-H2 finger protein ATL80 [Cucumis sativus])

HSP 1 Score: 359.4 bits (921), Expect = 3.7e-96
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 1


Query: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS 60
           MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS
Sbjct: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS 60

Query: 61  ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 120
           ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD
Sbjct: 61  ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 120

Query: 121 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVED--NNNNNNRGLGFL 180
           TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVED  NNNNNNRGLGFL
Sbjct: 121 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNINNNNNNRGLGFL 180

[Close]

BLAST of CSPI03G00140 vs. NCBI nr
Match: gi|659096550|ref|XP_008449155.1| (PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 1


Query: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS 60
           MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS
Sbjct: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQAS 60

Query: 61  ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 120
           ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD
Sbjct: 61  ANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 120

Query: 121 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNNNNNRGLGFLP 180
           TWLGTHSSCPSCRQILVVARCQKCGQFPA VQGG A NNEEEEVED NNN+NRGLGFLP
Sbjct: 121 TWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEVED-NNNDNRGLGFLP 178

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BLAST of CSPI03G00140 vs. NCBI nr
Match: gi|1009143999|ref|XP_015889562.1| (PREDICTED: RING-H2 finger protein ATL8 [Ziziphus jujuba])

HSP 1 Score: 232.6 bits (592), Expect = 5.2e-58
Identity = 125/195 (64.10%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 9   TANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGN----------- 68
           TA    APPPEAV LESDFVVILAALLCALIC+VGLIAVARCAWLRRG+           
Sbjct: 17  TAMVVEAPPPEAVTLESDFVVILAALLCALICVVGLIAVARCAWLRRGSAAGGRGTRSPS 76

Query: 69  QASANRGLKKKILQSLPKFRYKSTVGD------GKIAAECAICLAEFLEGEEIRQLPQCG 128
           QA+AN+GLKKK+LQSLPKF Y +   D       KIA ECAICL EF EGEEIR LPQCG
Sbjct: 77  QAAANKGLKKKVLQSLPKFTYGAATADVCGGEPAKIATECAICLGEFAEGEEIRVLPQCG 136

Query: 129 HCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNN-- 180
           H FHV C+DTWLG+HSSCPSCRQILVV RCQKCGQFPA V GG A    E +++   +  
Sbjct: 137 HSFHVGCIDTWLGSHSSCPSCRQILVVGRCQKCGQFPA-VSGGSAAARSEAQMKARQDIS 196

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BLAST of CSPI03G00140 vs. NCBI nr
Match: gi|802555427|ref|XP_012065428.1| (PREDICTED: RING-H2 finger protein ATL8 [Jatropha curcas])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 129/209 (61.72%), Postives = 146/209 (69.86%), Query Frame = 1


Query: 1   MSPYIRALTA--NTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQ 60
           M  + R LT+  +T  A PPEAV +ESDFVVILAALLCALIC+VGLIAVARCAWLRRG+ 
Sbjct: 1   MPRFPRMLTSLDSTPVADPPEAVNVESDFVVILAALLCALICVVGLIAVARCAWLRRGSG 60

Query: 61  AS-----------ANRGLKKKILQSLPKFRYKSTVGDG----KIAA-ECAICLAEFLEGE 120
            S           AN+GLKKKI+QSLPKF Y +T   G    K A+ ECAICL EF EG+
Sbjct: 61  GSTSRSTSQAAAVANKGLKKKIVQSLPKFTYGATAAGGGSSCKFASTECAICLGEFAEGD 120

Query: 121 EIRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPA--DVQGGGAHNNE 180
           E+R LPQCGH FHV C+DTWLG+HSSCPSCRQILVVARCQKCGQFPA    +GG A    
Sbjct: 121 EVRILPQCGHGFHVGCIDTWLGSHSSCPSCRQILVVARCQKCGQFPAISSGRGGPAAETN 180

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BLAST of CSPI03G00140 vs. NCBI nr
Match: gi|356538405|ref|XP_003537694.1| (PREDICTED: RING-H2 finger protein ATL8-like [Glycine max])

HSP 1 Score: 219.5 bits (558), Expect = 4.6e-54
Identity = 114/171 (66.67%), Postives = 132/171 (77.19%), Query Frame = 1


Query: 9   TANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGN-------QASA 68
           TA  ++APPPEAVALESDFVVILAALLCALIC+VGL+AVARCAWLRRG+       QA A
Sbjct: 15  TAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSGAGNSPRQALA 74

Query: 69  NRGLKKKILQSLPKFRYKSTVGDGKIA-AECAICLAEFLEGEEIRQLPQCGHCFHVSCVD 128
           N+GLKKK+LQSLPKF Y  +     +A +ECAICLAEF  G+EIR LPQCGH FHV C+D
Sbjct: 75  NKGLKKKVLQSLPKFAYVDSNPSKWLATSECAICLAEFAAGDEIRVLPQCGHGFHVPCID 134

Query: 129 TWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNNNNN 172
           TWLG+HSSCPSCRQ+L VARCQKCG+FPA   G       E E++   +NN
Sbjct: 135 TWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGASRTPATEPELKSREDNN 185

The following BLAST results are available for this feature:

BLAST of CSPI03G00140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL80_ARATH	3.3e-44	53.72	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1	[more]
ATL8_ARATH	2.1e-43	52.54	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2	[more]
ATL45_ARATH	2.2e-40	55.06	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2...	[more]
ATL44_ARATH	4.2e-39	52.12	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2...	[more]
ATL74_ARATH	2.9e-24	50.81	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1	[more]

BLAST of CSPI03G00140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L622_CUCSA	2.6e-96	98.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000150 PE=4 SV=1	[more]
A0A067L9A2_JATCU	1.0e-55	61.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22415 PE=4 SV=1	[more]
I1LIC9_SOYBN	3.2e-54	66.67	Uncharacterized protein OS=Glycine max GN=GLYMA_11G087600 PE=4 SV=1	[more]
M5VR28_PRUPE	7.1e-54	72.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011201mg PE=4 SV=1	[more]
A0A0S3T407_PHAAN	2.7e-53	63.04	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G139300 PE=...	[more]

BLAST of CSPI03G00140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20823.1	1.9e-45	53.72	RING/U-box superfamily protein	[more]
AT1G76410.1	1.2e-44	52.54	RING/U-box superfamily protein	[more]
AT4G35480.1	1.2e-41	55.06	RING-H2 finger A3B	[more]
AT2G17450.1	2.4e-40	52.12	RING-H2 finger A3A	[more]
AT5G01880.1	1.6e-25	50.81	RING/U-box superfamily protein	[more]

BLAST of CSPI03G00140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456961\|ref\|XP_004146217.1\|	3.7e-96	98.90	PREDICTED: RING-H2 finger protein ATL80 [Cucumis sativus]	[more]
gi\|659096550\|ref\|XP_008449155.1\|	2.5e-92	97.21	PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo]	[more]
gi\|1009143999\|ref\|XP_015889562.1\|	5.2e-58	64.10	PREDICTED: RING-H2 finger protein ATL8 [Ziziphus jujuba]	[more]
gi\|802555427\|ref\|XP_012065428.1\|	1.4e-55	61.72	PREDICTED: RING-H2 finger protein ATL8 [Jatropha curcas]	[more]
gi\|356538405\|ref\|XP_003537694.1\|	4.6e-54	66.67	PREDICTED: RING-H2 finger protein ATL8-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G00140.1	CSPI03G00140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 90..133 score: 8.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 91..132 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 91..133 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 89..135 score: 4.5
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 15..152 score: 2.4
None	No IPR available	PANTHER	PTHR14155:SF187	SUBFAMILY NOT NAMED	coord: 15..152 score: 2.4
None	No IPR available	SMART	SM01197	FANCL_C_2	coord: 87..141 score: 0.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 69..139 score: 3.53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G00140	Cla008958	Watermelon (97103) v1	cpiwmB200
CSPI03G00140	Csa3G000150	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G00140	MELO3C013708	Melon (DHL92) v3.5.1	cpimeB240
CSPI03G00140	ClCG10G000130	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G00140	Lsi07G010380	Bottle gourd (USVL1VR-Ls)	cpilsiB227
CSPI03G00140	MELO3C013708.2	Melon (DHL92) v3.6.1	cpimedB225
CSPI03G00140	CsaV3_UNG159170	Cucumber (Chinese Long) v3	cpicucB158
CSPI03G00140	Cla97C10G184660	Watermelon (97103) v2	cpiwmbB184
CSPI03G00140	Bhi11G000269	Wax gourd	cpiwgoB246
CSPI03G00140	Cucsa.323250	Cucumber (Gy14) v1	cgycpiB484
CSPI03G00140	CmaCh06G001690	Cucurbita maxima (Rimu)	cmacpiB840
CSPI03G00140	CmoCh06G001590	Cucurbita moschata (Rifu)	cmocpiB825
CSPI03G00140	Cp4.1LG08g12810	Cucurbita pepo (Zucchini)	cpecpiB853
CSPI03G00140	Cp4.1LG02g08490	Cucurbita pepo (Zucchini)	cpecpiB557
CSPI03G00140	Carg01168	Silver-seed gourd	carcpiB0179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G00140	Bottle gourd (USVL1VR-Ls)	cpilsiB164
CSPI03G00140	Melon (DHL92) v3.6.1	cpimedB254
CSPI03G00140	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G00140	Cucumber (Gy14) v2	cgybcpiB272
CSPI03G00140	Silver-seed gourd	carcpiB0467
CSPI03G00140	Silver-seed gourd	carcpiB0671
CSPI03G00140	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G00140	Cucumber (Chinese Long) v3	cpicucB184
CSPI03G00140	Watermelon (97103) v2	cpiwmbB182
CSPI03G00140	Wax gourd	cpiwgoB329
CSPI03G00140	Wild cucumber (PI 183967)	cpicpiB133
CSPI03G00140	Cucumber (Gy14) v1	cgycpiB025
CSPI03G00140	Cucurbita maxima (Rimu)	cmacpiB332
CSPI03G00140	Cucurbita maxima (Rimu)	cmacpiB871
CSPI03G00140	Cucurbita moschata (Rifu)	cmocpiB323
CSPI03G00140	Cucurbita moschata (Rifu)	cmocpiB852
CSPI03G00140	Cucumber (Chinese Long) v2	cpicuB156
CSPI03G00140	Melon (DHL92) v3.5.1	cpimeB258
CSPI03G00140	Watermelon (Charleston Gray)	cpiwcgB212
CSPI03G00140	Watermelon (97103) v1	cpiwmB262
CSPI03G00140	Cucurbita pepo (Zucchini)	cpecpiB215
CSPI03G00140	Cucurbita pepo (Zucchini)	cpecpiB485