CSPI02G24470 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G24470
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Fanconi anemia group M
Location	Chr2 : 20998916 .. 21000366 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGTGAAATATTTTCTTCAAGTTCAATTTTGTAGTATTCGATGATTTAGAAGTGCACACAATCCAATCAATTATTTATTCTTAAACTTGCCTCAATGTGCTAATACTACTTAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGTTTGCAATTTCATTTTTCTTCATTTTTGGTTATTATTTAGTTAATGATATAGTATCTTTTGGGATAATCTTGTTTTTTTTTTAAAAAAAACTGAGACAAACCTCTTTATTAATGATAATAAATGAGATTTAGGCTCAAAATACAAGAGTATTATACTAAGAGCAAGAGAACTAGGGGAGAATACAGTCAAAGACTAAAACAGAAGCTAAACTTGGGCAACAAAAAATGGCAATCCAAAGGAAATCAGTATTCTTTTGAGAACTTATGTACACCAGTTAATTACTAGTTTAGCCGTGAACTTTCAAAATTGTGTTTTTATAGTTTATGAAACTCGTTGATAAAAGTTACAAAACATTGAAAGTTTAGAGGCTTATGATCTCTTTTCAAATTCTGGGACCTCTCTTTAGACAACCCTAAAACTTGAACCGTCACTCTTGTAATTTGACCCTTCATTAAATTTATCATACCAACCAAATTAAACTTTTGGGTTGATTGGTTAGTTAACAATATTGGATACGTTTTTCTTTATGTACATAAGCACATATGAGATGATTATATTGTAGAGCTTCTTCTTTGGCCTATTTAATTTTATCTGGATAGTCCTATTGTTGAAAAGCTAATGAGAAAAGTTTGTCAATCCGAATTGGGCTTAAATATATCTAAATTGCTCCAGTTATGTATGGTTTGGTATTTATAGAGCTTGGACTTAATGCTTAAATTACACATTTTATTGATGAAATGAAAAGAGACTAATGTTTGAATTACAAAGAAGCTAGAAATCACAAGAACTAGGGATCAGCATGCTTAAATATATCTAGCTTGGACTTCTTCTATTTGTTTGGAAATATTTTTGACGTTGGACAAGCTACTTAGTCTGAGTATTGCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGGTAGGCAATCCGGGTTTGTGGTTACTATCCCTATTAACTACCTGCACTGAATTTATACTTTTCAACAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT

mRNA sequence

GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT

Coding sequence (CDS)

GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT

Homology

[Close]

BLAST of CSPI02G24470 vs. Swiss-Prot
Match: FANCM_HUMAN (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-33
Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 3   KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEK 62
           K   ++RV+IFS+FR SV++I   LS+ + I+R   F+G +SGKS KG +QK Q  V+++
Sbjct: 472 KKRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQ 531

Query: 63  FRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL--- 122
           FR GG+N +V+TC+GEEGLDI EVDL+ICFD+  SPIR++QRMGRTGRK  GR+ I+   
Sbjct: 532 FRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSE 591

Query: 123 --EHSIINQS 128
             E  I NQS
Sbjct: 592 GREERIYNQS 601

[Close]

BLAST of CSPI02G24470 vs. Swiss-Prot
Match: FANCM_MOUSE (Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-31
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 1


Query: 3   KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEK 62
           K   +SRV+IFS+FR SV +I   L +   ++R   F+G +SGK+ KG +QK Q  V+ +
Sbjct: 457 KKCHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQ 516

Query: 63  FRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL--- 122
           FR GG+N +V+TC+GEEGLDI EVDL+ICFDA  SPIR+IQRMGRTGRK  GR+ ++   
Sbjct: 517 FRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAE 576

Query: 123 --EHSIINQS 128
             E    NQS
Sbjct: 577 GREERTYNQS 586

[Close]

BLAST of CSPI02G24470 vs. Swiss-Prot
Match: MPH1_SCLS1 (ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mph1 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-30
Identity = 62/115 (53.91%), Postives = 85/115 (73.91%), Query Frame = 1


Query: 5   PQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFR 64
           P  +RVI+F+ +R S  DI   L+K   ++RA+ F+GQS  K  +G +Q+ Q   + KF+
Sbjct: 634 PSSTRVIVFTEYRDSAEDIARVLNKHGPMIRASVFVGQSDSKRSEGMNQEKQLETIRKFK 693

Query: 65  AGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           AGG NVIVAT IGEEGLDI EVDL++C+D++ SPIRM+QRMGRTGRK  G++ +L
Sbjct: 694 AGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKRAGKIVLL 748

[Close]

BLAST of CSPI02G24470 vs. Swiss-Prot
Match: MPH1_ASPNC (ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mph1 PE=3 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-30
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           E KD   +RV+IF +FR S  ++   L + E ++R   F+GQSS K  +G  QK Q  ++
Sbjct: 686 ENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIV 745

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           +KF+ G +N IVAT IGEEGLDI EVDL++C+D++ SPIRM+QRMGRTGRK  G++ +L
Sbjct: 746 QKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRSGKITLL 804

[Close]

BLAST of CSPI02G24470 vs. Swiss-Prot
Match: MPH1_BOTFB (ATP-dependent DNA helicase MPH1 OS=Botryotinia fuckeliana (strain B05.10) GN=mph1 PE=3 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-29
Identity = 61/115 (53.04%), Postives = 85/115 (73.91%), Query Frame = 1


Query: 5   PQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFR 64
           P  +RVI+F+ +R S  DI   L+K   +++A+ F+GQS  K  +G +Q+ Q   + KF+
Sbjct: 640 PSSTRVIVFTEYRDSAEDIARVLNKHGPMIKASVFVGQSDSKRSEGMNQEKQLETIRKFK 699

Query: 65  AGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           AGG NVIVAT IGEEGLDI EVDL++C+D++ SPIRM+QRMGRTGRK  G++ +L
Sbjct: 700 AGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKRAGKIVLL 754

[Close]

BLAST of CSPI02G24470 vs. TrEMBL
Match: A0A0A0LQJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393190 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-57
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 7   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 66

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 67  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 125

[Close]

BLAST of CSPI02G24470 vs. TrEMBL
Match: V4SJC4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000033mg PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-52
Identity = 107/123 (86.99%), Postives = 117/123 (95.12%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           ETKDP+ SRVIIFSNFRGSVRDIM+AL+ I D+V+ATEFIGQSSGK+LKGQSQKVQQAVL
Sbjct: 469 ETKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKALKGQSQKVQQAVL 528

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILE 120
           EKFRAGG+NVIVAT IGEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL 
Sbjct: 529 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDILF 588

Query: 121 HSI 124
           + I
Sbjct: 589 YLI 591

[Close]

BLAST of CSPI02G24470 vs. TrEMBL
Match: A0A061FRW8_THECC (DEAD/DEAH box RNA helicase family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_036398 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-51
Identity = 104/118 (88.14%), Postives = 115/118 (97.46%), Query Frame = 1


Query: 2   TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLE 61
           TKDPQ+SRVIIFSNFRGSVRDIM+AL+ I D+V+ATEFIGQSSGK+LKGQSQKVQQAVLE
Sbjct: 473 TKDPQNSRVIIFSNFRGSVRDIMNALANIGDLVKATEFIGQSSGKALKGQSQKVQQAVLE 532

Query: 62  KFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           KFRAGG+NVIVAT IGEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKH+G+VDIL
Sbjct: 533 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHEGQVDIL 590

[Close]

BLAST of CSPI02G24470 vs. TrEMBL
Match: B9I6I5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11390g PE=4 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-51
Identity = 103/119 (86.55%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQ+SRVIIFSNFRGSVRDIM+ L+ I D+V+ATEFIGQSSGK+LKGQSQKVQQAVL
Sbjct: 313 KTKDPQNSRVIIFSNFRGSVRDIMNTLATIGDLVKATEFIGQSSGKALKGQSQKVQQAVL 372

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           +KFRAGG+NVIVAT IGEEGLDIMEVDLV+CFDAN+SP+RMIQRMGRTGRKHDGRVDIL
Sbjct: 373 QKFRAGGYNVIVATSIGEEGLDIMEVDLVVCFDANVSPLRMIQRMGRTGRKHDGRVDIL 431

[Close]

BLAST of CSPI02G24470 vs. TrEMBL
Match: A0A0D2VDJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G139300 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.1e-51
Identity = 103/119 (86.55%), Postives = 114/119 (95.80%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +T+DPQ+SRVIIFSNFRGSVRDIM+AL  I D+V+ATEFIGQSSGK+LKGQSQKVQQAVL
Sbjct: 463 QTRDPQNSRVIIFSNFRGSVRDIMNALESIRDLVKATEFIGQSSGKALKGQSQKVQQAVL 522

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGG+NVIVAT IGEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRV +L
Sbjct: 523 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVVVL 581

[Close]

BLAST of CSPI02G24470 vs. TAIR10
Match: AT1G35530.2 (AT1G35530.2 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 199.1 bits (505), Expect = 1.6e-51
Identity = 99/115 (86.09%), Postives = 110/115 (95.65%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           + KDP+ SRVIIFSNFRGSVRDIM+ALS I D+V+ATEFIGQSSGK+LKGQSQK+QQAVL
Sbjct: 461 KVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVL 520

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGR 116
           EKFRAGGFNVIVAT IGEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRK++GR
Sbjct: 521 EKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGR 575

[Close]

BLAST of CSPI02G24470 vs. TAIR10
Match: AT5G26742.2 (AT5G26742.2 DEAD box RNA helicase (RH3))

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 30/71 (42.25%), Postives = 38/71 (53.52%), Query Frame = 1


Query: 52  SQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRK 111
           SQ  ++  L  FR G F V+VAT +   GLDI  VDLVI ++    P   + R GRTGR 
Sbjct: 385 SQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRA 444

Query: 112 HDGRVDILEHS 123
                 IL H+
Sbjct: 445 GKEGSAILMHT 455

[Close]

BLAST of CSPI02G24470 vs. TAIR10
Match: AT3G03300.1 (AT3G03300.1 dicer-like 2)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 41  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR 100
           G +SG  L+ Q++K Q  ++E FR G  N+IVAT I EEGLD+   +LVI FD   +   
Sbjct: 424 GNNSG--LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICS 483

Query: 101 MIQRMGRTGRKHDGRVDILE 121
            IQ  GR   ++   + ++E
Sbjct: 484 FIQSRGRARMQNSDYLMMVE 501

[Close]

BLAST of CSPI02G24470 vs. TAIR10
Match: AT5G20320.1 (AT5G20320.1 dicer-like 4)

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 9   RVIIFSNFRGSVRDIMSALSKIEDIVRATE---FIGQSSGKSLKGQSQKVQQAVLEKFRA 68
           + IIF N   + R +   L+ +E ++R+ +    +G SSG  LK  S++  + +L++F++
Sbjct: 490 KCIIFVNRIVTARTLSCILNNLE-LLRSWKSDFLVGLSSG--LKSMSRRSMETILKRFQS 549

Query: 69  GGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGR 108
              N++VAT +GEEGLDI    LVI +D   +    IQ  GR
Sbjct: 550 KELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGR 588

[Close]

BLAST of CSPI02G24470 vs. TAIR10
Match: AT1G16280.1 (AT1G16280.1 RNA helicase 36)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 52  SQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRK 111
           SQ ++ + L KF++G   +++AT +   GLDI  VDLVI +D    P   + R+GRT R 
Sbjct: 337 SQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARA 396

Query: 112 HDGRVDILEHSIINQS 128
             G + +   SII ++
Sbjct: 397 GRGGLAV---SIITET 409

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: gi|700207933|gb|KGN63052.1| (hypothetical protein Csa_2G393190 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-57
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 7   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 66

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 67  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 125

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: gi|778672808|ref|XP_011649875.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: gi|659081087|ref|XP_008441145.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: gi|778672811|ref|XP_011649876.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 469 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 528

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 529 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 587

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: gi|659081094|ref|XP_008441148.1| (PREDICTED: Fanconi anemia group M protein isoform X4 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

The following BLAST results are available for this feature:

BLAST of CSPI02G24470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FANCM_HUMAN	4.2e-33	54.62	Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2	[more]
FANCM_MOUSE	1.7e-31	53.08	Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3	[more]
MPH1_SCLS1	7.3e-30	53.91	ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /...	[more]
MPH1_ASPNC	7.3e-30	51.26	ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A...	[more]
MPH1_BOTFB	1.6e-29	53.04	ATP-dependent DNA helicase MPH1 OS=Botryotinia fuckeliana (strain B05.10) GN=mph...	[more]

BLAST of CSPI02G24470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQJ7_CUCSA	2.9e-57	98.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393190 PE=4 SV=1	[more]
V4SJC4_9ROSI	2.8e-52	86.99	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000033mg PE=4 SV=1	[more]
A0A061FRW8_THECC	1.8e-51	88.14	DEAD/DEAH box RNA helicase family protein, putative isoform 1 OS=Theobroma cacao...	[more]
B9I6I5_POPTR	1.8e-51	86.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11390g PE=4 SV=2	[more]
A0A0D2VDJ0_GOSRA	3.1e-51	86.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G139300 PE=4 SV=1	[more]

BLAST of CSPI02G24470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G35530.2	1.6e-51	86.09	DEAD/DEAH box RNA helicase family protein	[more]
AT5G26742.2	1.1e-07	42.25	DEAD box RNA helicase (RH3)	[more]
AT3G03300.1	1.1e-07	40.00	dicer-like 2	[more]
AT5G20320.1	1.4e-07	35.29	dicer-like 4	[more]
AT1G16280.1	1.2e-06	36.84	RNA helicase 36	[more]

BLAST of CSPI02G24470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207933\|gb\|KGN63052.1\|	4.1e-57	98.32	hypothetical protein Csa_2G393190 [Cucumis sativus]	[more]
gi\|778672808\|ref\|XP_011649875.1\|	1.2e-56	97.48	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus]	[more]
gi\|659081087\|ref\|XP_008441145.1\|	1.2e-56	97.48	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]	[more]
gi\|778672811\|ref\|XP_011649876.1\|	1.2e-56	97.48	PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis sativus]	[more]
gi\|659081094\|ref\|XP_008441148.1\|	1.2e-56	97.48	PREDICTED: Fanconi anemia group M protein isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G24470.1	CSPI02G24470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 6..111 score: 1.1
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 22..112 score: 1.6
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 1..128 score: 14
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 4..116 score: 1.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..117 score: 4.29
None	No IPR available	PANTHER	PTHR14025	FAMILY NOT NAMED	coord: 1..119 score: 1.2
None	No IPR available	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 1..119 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G24470	ClCG11G008680	Watermelon (Charleston Gray)	cpiwcgB103
CSPI02G24470	Lsi11G010040	Bottle gourd (USVL1VR-Ls)	cpilsiB098
CSPI02G24470	Cla97C11G214970	Watermelon (97103) v2	cpiwmbB113
CSPI02G24470	Bhi04G002085	Wax gourd	cpiwgoB157

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G24470	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G24470	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G24470	Silver-seed gourd	carcpiB0018
CSPI02G24470	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G24470	Wax gourd	cpiwgoB161
CSPI02G24470	Cucumber (Gy14) v1	cgycpiB239
CSPI02G24470	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G24470	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G24470	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G24470	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G24470	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G24470	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G24470	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G24470	Watermelon (97103) v1	cpiwmB159
CSPI02G24470	Watermelon (97103) v1	cpiwmB167
CSPI02G24470	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G24470	Cucurbita pepo (Zucchini)	cpecpiB385
CSPI02G24470	Cucurbita pepo (Zucchini)	cpecpiB777