ClCG11G008680 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G008680
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	ATP-dependent DNA helicase mph1
Location	CG_Chr11 : 12616246 .. 12616665 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGTATTGCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGGTAGGCAATCAGGGTTTGCGTGTACTATCCTTATTAGTTACTCTATTAGTTACTTGTACTGAATTATATACTTTTTCACAGAAATTTCGTGCTGGCGGTTACAATGTCATTGTTGCCACATGCATTGGAGAAGAAGGGCTTGATATAATGGAAGTTGATCTTGTCATCTGTTTTGATGCGAACATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACTGGAAGGAAGCATGATGGACGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCATTTATTGAATTTCGAAGTTGTTATATCTAATGTTATTTTTTGTCAGTTTAGCAAGATATTATGCCTATTTGTTTGT

mRNA sequence

TGGAGTATTGCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGGTAGGCAATCAGGGTTTGCGTGTACTATCCTTATTAGTTACTCTATTAGTTACTTGTACTGAATTATATACTTTTTCACAGAAATTTCGTGCTGGCGGTTACAATGTCATTGTTGCCACATGCATTGGAGAAGAAGGGCTTGATATAATGGAAGTTGATCTTGTCATCTGTTTTGATGCGAACATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACTGGAAGGAAGCATGATGGACGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCATTTATTGAATTTCGAAGTTGTTATATCTAATTTTAGCAAGATATTATGCCTATTTGTTTGT

Coding sequence (CDS)

TGGAGTATTGCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGGTAGGCAATCAGGGTTTGCGTGTACTATCCTTATTAGTTACTCTATTAGTTACTTGTACTGAATTATATACTTTTTCACAGAAATTTCGTGCTGGCGGTTACAATGTCATTGTTGCCACATGCATTGGAGAAGAAGGGCTTGATATAATGGAAGTTGATCTTGTCATCTGTTTTGATGCGAACATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACTGGAAGGAAGCATGATGGACGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCATTTATTGAATTTCGAAGTTGTTATATCTAATTTTAGCAAGATATTATGCCTATTTGTTTGT

Protein sequence

WSIAGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSHLLNFEVVISNFSKILCLFVC

Homology

[Close]

BLAST of ClCG11G008680 vs. Swiss-Prot
Match: FANCM_HUMAN (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 8.0e-19
Identity = 54/116 (46.55%), Postives = 66/116 (56.90%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GKS KG +QK Q  V++                           +FR GGYN +V+TC+
Sbjct: 513 SGKSTKGFTQKEQLEVVK---------------------------QFRDGGYNTLVSTCV 572

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL-----EHSIINQS 115
           GEEGLDI EVDL+ICFD+  SPIR++QRMGRTGRK  GR+ I+     E  I NQS
Sbjct: 573 GEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQS 601

[Close]

BLAST of ClCG11G008680 vs. Swiss-Prot
Match: FANCM_MOUSE (Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 48  QKFRAGGYNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL- 107
           ++FR GGYN +V+TC+GEEGLDI EVDL+ICFDA  SPIR+IQRMGRTGRK  GR+ ++ 
Sbjct: 515 RQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVIL 574

Query: 108 ----EHSIIN--QSHLLNFEVVISNFSKILCLF 134
               E    N  QS+  N    IS   ++L L+
Sbjct: 575 AEGREERTYNQSQSNKKNIYKAISGNRQVLRLY 607

[Close]

BLAST of ClCG11G008680 vs. Swiss-Prot
Match: MPH1_BOTFB (ATP-dependent DNA helicase MPH1 OS=Botryotinia fuckeliana (strain B05.10) GN=mph1 PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-17
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 48  QKFRAGGYNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 107
           +KF+AGG NVIVAT IGEEGLDI EVDL++C+D++ SPIRM+QRMGRTGRK  G++ +L
Sbjct: 696 RKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKRAGKIVLL 754

[Close]

BLAST of ClCG11G008680 vs. Swiss-Prot
Match: MPH1_SCLS1 (ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mph1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-17
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 48  QKFRAGGYNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 107
           +KF+AGG NVIVAT IGEEGLDI EVDL++C+D++ SPIRM+QRMGRTGRK  G++ +L
Sbjct: 690 RKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKRAGKIVLL 748

[Close]

BLAST of ClCG11G008680 vs. Swiss-Prot
Match: MPH1_ASPNC (ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mph1 PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-17
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 48  QKFRAGGYNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 107
           QKF+ G YN IVAT IGEEGLDI EVDL++C+D++ SPIRM+QRMGRTGRK  G++ +L
Sbjct: 746 QKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRSGKITLL 804

[Close]

BLAST of ClCG11G008680 vs. TrEMBL
Match: V4SJC4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000033mg PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-28
Identity = 73/114 (64.04%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGGYNVIVAT I
Sbjct: 512 SGKALKGQSQKVQQAVLE---------------------------KFRAGGYNVIVATSI 571

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSHLL 118
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL + I   + +L
Sbjct: 572 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDILFYLINTPNEVL 598

[Close]

BLAST of ClCG11G008680 vs. TrEMBL
Match: A0A0A0LQJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393190 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.6e-28
Identity = 72/103 (69.90%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GKSLKGQSQKVQQAVLE                           KFRAGG+NVIVATCI
Sbjct: 50  SGKSLKGQSQKVQQAVLE---------------------------KFRAGGFNVIVATCI 109

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 107
           GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 110 GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 125

[Close]

BLAST of ClCG11G008680 vs. TrEMBL
Match: M5XL34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000428mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 71/103 (68.93%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGGYNVIVAT I
Sbjct: 355 SGKALKGQSQKVQQAVLE---------------------------KFRAGGYNVIVATSI 414

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 107
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL
Sbjct: 415 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDIL 430

[Close]

BLAST of ClCG11G008680 vs. TrEMBL
Match: B9I6I5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11390g PE=4 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 70/103 (67.96%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVL                           QKFRAGGYNVIVAT I
Sbjct: 356 SGKALKGQSQKVQQAVL---------------------------QKFRAGGYNVIVATSI 415

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 107
           GEEGLDIMEVDLV+CFDAN+SP+RMIQRMGRTGRKHDGRVDIL
Sbjct: 416 GEEGLDIMEVDLVVCFDANVSPLRMIQRMGRTGRKHDGRVDIL 431

[Close]

BLAST of ClCG11G008680 vs. TrEMBL
Match: A0A061FRW8_THECC (DEAD/DEAH box RNA helicase family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_036398 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.5e-27
Identity = 69/103 (66.99%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGGYNVIVAT I
Sbjct: 515 SGKALKGQSQKVQQAVLE---------------------------KFRAGGYNVIVATSI 574

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 107
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKH+G+VDIL
Sbjct: 575 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHEGQVDIL 590

[Close]

BLAST of ClCG11G008680 vs. TAIR10
Match: AT1G35530.2 (AT1G35530.2 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 117.5 bits (293), Expect = 6.5e-27
Identity = 63/99 (63.64%), Postives = 69/99 (69.70%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQK+QQAVLE                           KFRAGG+NVIVAT I
Sbjct: 504 SGKTLKGQSQKIQQAVLE---------------------------KFRAGGFNVIVATSI 563

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGR 103
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRK++GR
Sbjct: 564 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGR 575

[Close]

BLAST of ClCG11G008680 vs. TAIR10
Match: AT5G26742.2 (AT5G26742.2 DEAD box RNA helicase (RH3))

HSP 1 Score: 47.8 bits (112), Expect = 6.3e-06
Identity = 26/60 (43.33%), Postives = 31/60 (51.67%), Query Frame = 1


Query: 50  FRAGGYNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHS 109
           FR G + V+VAT +   GLDI  VDLVI ++    P   + R GRTGR       IL H+
Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455

[Close]

BLAST of ClCG11G008680 vs. TAIR10
Match: AT5G60990.1 (AT5G60990.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-06
Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 1


Query: 49  KFRAGGYNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEH 108
           KF+AG  N++V T +   GLDI  VD+VI +D   +    I R+GRT R     V I   
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGI--- 364

Query: 109 SIINQSHL 117
           S++NQ  L
Sbjct: 365 SLVNQYEL 369

[Close]

BLAST of ClCG11G008680 vs. NCBI nr
Match: gi|729296400|ref|XP_010543526.1| (PREDICTED: uncharacterized protein LOC104816395 isoform X4 [Tarenaya hassleriana])

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 74/124 (59.68%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGG+NVIVAT I
Sbjct: 529 SGKTLKGQSQKVQQAVLE---------------------------KFRAGGFNVIVATSI 588

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSHLLNFEVVI 123
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL+   ++  HL+ +  V+
Sbjct: 589 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDILKRFFLSTCHLI-YAYVL 624

Query: 124 SNFS 128
            +F+
Sbjct: 649 DHFT 624

[Close]

BLAST of ClCG11G008680 vs. NCBI nr
Match: gi|729296394|ref|XP_010543500.1| (PREDICTED: uncharacterized protein LOC104816395 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 74/124 (59.68%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGG+NVIVAT I
Sbjct: 536 SGKTLKGQSQKVQQAVLE---------------------------KFRAGGFNVIVATSI 595

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSHLLNFEVVI 123
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL+   ++  HL+ +  V+
Sbjct: 596 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDILKRFFLSTCHLI-YAYVL 631

Query: 124 SNFS 128
            +F+
Sbjct: 656 DHFT 631

[Close]

BLAST of ClCG11G008680 vs. NCBI nr
Match: gi|729296402|ref|XP_010543535.1| (PREDICTED: uncharacterized protein LOC104816395 isoform X5 [Tarenaya hassleriana])

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 74/124 (59.68%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGG+NVIVAT I
Sbjct: 536 SGKTLKGQSQKVQQAVLE---------------------------KFRAGGFNVIVATSI 595

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSHLLNFEVVI 123
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL+   ++  HL+ +  V+
Sbjct: 596 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDILKRFFLSTCHLI-YAYVL 631

Query: 124 SNFS 128
            +F+
Sbjct: 656 DHFT 631

[Close]

BLAST of ClCG11G008680 vs. NCBI nr
Match: gi|729296398|ref|XP_010543518.1| (PREDICTED: ATP-dependent DNA helicase mph1 isoform X3 [Tarenaya hassleriana])

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 74/124 (59.68%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGG+NVIVAT I
Sbjct: 536 SGKTLKGQSQKVQQAVLE---------------------------KFRAGGFNVIVATSI 595

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSHLLNFEVVI 123
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL+   ++  HL+ +  V+
Sbjct: 596 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDILKRFFLSTCHLI-YAYVL 631

Query: 124 SNFS 128
            +F+
Sbjct: 656 DHFT 631

[Close]

BLAST of ClCG11G008680 vs. NCBI nr
Match: gi|567884059|ref|XP_006434588.1| (hypothetical protein CICLE_v10000033mg [Citrus clementina])

HSP 1 Score: 132.1 bits (331), Expect = 7.2e-28
Identity = 73/114 (64.04%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 4   AGKSLKGQSQKVQQAVLEVGNQGLRVLSLLVTLLVTCTELYTFSQKFRAGGYNVIVATCI 63
           +GK+LKGQSQKVQQAVLE                           KFRAGGYNVIVAT I
Sbjct: 512 SGKALKGQSQKVQQAVLE---------------------------KFRAGGYNVIVATSI 571

Query: 64  GEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSHLL 118
           GEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGRVDIL + I   + +L
Sbjct: 572 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVDILFYLINTPNEVL 598

The following BLAST results are available for this feature:

BLAST of ClCG11G008680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FANCM_HUMAN	8.0e-19	46.55	Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2	[more]
FANCM_MOUSE	1.0e-18	53.76	Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3	[more]
MPH1_BOTFB	2.6e-17	69.49	ATP-dependent DNA helicase MPH1 OS=Botryotinia fuckeliana (strain B05.10) GN=mph...	[more]
MPH1_SCLS1	2.6e-17	69.49	ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /...	[more]
MPH1_ASPNC	2.6e-17	67.80	ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A...	[more]

BLAST of ClCG11G008680 vs. TrEMBL


Match Name	E-value	Identity	Description
V4SJC4_9ROSI	5.0e-28	64.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000033mg PE=4 SV=1	[more]
A0A0A0LQJ7_CUCSA	6.6e-28	69.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393190 PE=4 SV=1	[more]
M5XL34_PRUPE	1.1e-27	68.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000428mg PE=4 SV=1	[more]
B9I6I5_POPTR	1.5e-27	67.96	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11390g PE=4 SV=2	[more]
A0A061FRW8_THECC	9.5e-27	66.99	DEAD/DEAH box RNA helicase family protein, putative isoform 1 OS=Theobroma cacao...	[more]

BLAST of ClCG11G008680 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G35530.2	6.5e-27	63.64	DEAD/DEAH box RNA helicase family protein	[more]
AT5G26742.2	6.3e-06	43.33	DEAD box RNA helicase (RH3)	[more]
AT5G60990.1	8.3e-06	41.18	DEA(D/H)-box RNA helicase family protein	[more]

BLAST of ClCG11G008680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729296400\|ref\|XP_010543526.1\|	5.0e-29	59.68	PREDICTED: uncharacterized protein LOC104816395 isoform X4 [Tarenaya hassleriana...	[more]
gi\|729296394\|ref\|XP_010543500.1\|	5.0e-29	59.68	PREDICTED: uncharacterized protein LOC104816395 isoform X1 [Tarenaya hassleriana...	[more]
gi\|729296402\|ref\|XP_010543535.1\|	5.0e-29	59.68	PREDICTED: uncharacterized protein LOC104816395 isoform X5 [Tarenaya hassleriana...	[more]
gi\|729296398\|ref\|XP_010543518.1\|	5.0e-29	59.68	PREDICTED: ATP-dependent DNA helicase mph1 isoform X3 [Tarenaya hassleriana]	[more]
gi\|567884059\|ref\|XP_006434588.1\|	7.2e-28	64.04	hypothetical protein CICLE_v10000033mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008680.1	ClCG11G008680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 48..98 score: 1.7
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 21..99 score: 2.
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 1..130 score: 10
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 48..106 score: 2.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 45..118 score: 3.6
None	No IPR available	PANTHER	PTHR14025	FAMILY NOT NAMED	coord: 48..106 score: 8.6
None	No IPR available	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 48..106 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G008680	CSPI02G24470	Wild cucumber (PI 183967)	cpiwcgB103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G008680	Cucumber (Gy14) v2	cgybwcgB095
ClCG11G008680	Melon (DHL92) v3.6.1	medwcgB260
ClCG11G008680	Silver-seed gourd	carwcgB0023
ClCG11G008680	Silver-seed gourd	carwcgB0303
ClCG11G008680	Cucumber (Chinese Long) v3	cucwcgB113
ClCG11G008680	Watermelon (97103) v2	wcgwmbB067
ClCG11G008680	Wax gourd	wcgwgoB159
ClCG11G008680	Cucumber (Gy14) v1	cgywcgB097
ClCG11G008680	Cucurbita maxima (Rimu)	cmawcgB250
ClCG11G008680	Cucurbita moschata (Rifu)	cmowcgB238
ClCG11G008680	Cucurbita moschata (Rifu)	cmowcgB633
ClCG11G008680	Cucumber (Chinese Long) v2	cuwcgB097
ClCG11G008680	Melon (DHL92) v3.5.1	mewcgB269
ClCG11G008680	Watermelon (97103) v1	wcgwmB104
ClCG11G008680	Cucurbita pepo (Zucchini)	cpewcgB162
ClCG11G008680	Cucurbita pepo (Zucchini)	cpewcgB367
ClCG11G008680	Bottle gourd (USVL1VR-Ls)	lsiwcgB079
ClCG11G008680	Bottle gourd (USVL1VR-Ls)	lsiwcgB088