CSPI02G10400 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G10400
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProline-rich protein
LocationChr2 : 10479903 .. 10480630 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACTTGCCCTCAAAACACCTACCTCATTAATGGCAAAATAATAACCCCATAAAATGCTATAAAAGGCCACAACCTATGAGGTTCCCAGTAGGAAAAACTCAAACTCCAAAAGCCACAATGTTTCTCAAATACTTCCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACACAAGCCCTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCAACCACCGACGTCACCCACGGAAAGCTCCCGACCACCATCACCGATCCAAACGAAGAATCCAAATTCTACAGGAGGCCGTCTCCCTACAAGAGGCCTTACAAGAGGCCACCCTACAAGAGGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAAATGGCATCCAAAACCAAAGTGGAGGCCATGGACAATTAATGTATCATCTGTTTAATTTCTTTGATAAATAAGTGGTGCTACAAGCTCCAAGGGTAATACTAGGAAGTTCATGATGTTGGCCTTTTGAATTATGTAATATCTGTTAATCCAAACTTCATATGTGTGACATATGGTTTGTATTTTCTGTGTTATTGCTTCACTTATTGTGTAATAATTTAAAGTTTGAATGGATTTAATATTTAGTTTCAAATATGTTAGTCTTCTTTTTATACTCTTTAGATTTAGATATTGAAATTGTACTGATTTCAACATTCAACATGTAGGAGAG

mRNA sequence

ATGAGGTTCCCAGTAGGAAAAACTCAAACTCCAAAAGCCACAATGTTTCTCAAATACTTCCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACACAAGCCCTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCAACCACCGACGTCACCCACGGAAAGCTCCCGACCACCATCACCGATCCAAACGAAGAATCCAAATTCTACAGGAGGCCGTCTCCCTACAAGAGGCCTTACAAGAGGCCACCCTACAAGAGGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAA

Coding sequence (CDS)

ATGAGGTTCCCAGTAGGAAAAACTCAAACTCCAAAAGCCACAATGTTTCTCAAATACTTCCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACACAAGCCCTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCAACCACCGACGTCACCCACGGAAAGCTCCCGACCACCATCACCGATCCAAACGAAGAATCCAAATTCTACAGGAGGCCGTCTCCCTACAAGAGGCCTTACAAGAGGCCACCCTACAAGAGGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAA
Homology
[Close]
BLAST of CSPI02G10400 vs. TrEMBL
Match: A0A0A0LI79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.5e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKFYRRPSPYK+PYKRPPYKRYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400 vs. TrEMBL
Match: A0A0A0LNP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 9.5e-46
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFP+GKTQT KATMF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKF+RRPSPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400 vs. TrEMBL
Match: Q8H0R6_CUCSA (Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.3e-38
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 

Query: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
           MF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTTITDPNEESKF+RRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           SPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of CSPI02G10400 vs. NCBI nr
Match: gi|778668784|ref|XP_004147144.2| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKFYRRPSPYK+PYKRPPYKRYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400 vs. NCBI nr
Match: gi|700206487|gb|KGN61606.1| (hypothetical protein Csa_2G176690 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFP+GKTQT KATMF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKF+RRPSPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400 vs. NCBI nr
Match: gi|525507184|ref|NP_001267631.1| (uncharacterized protein LOC101210961 precursor [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 6.1e-38
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 

Query: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
           MF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTTITDPNEESKF+RRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           SPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of CSPI02G10400 vs. NCBI nr
Match: gi|659121395|ref|XP_008460638.1| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 

Query: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
           MFLKYFLLLLLA VLL+TTQALKHPS S+QEVIPTTDVT G LPTTI DPNEESKFYRRP
Sbjct: 1   MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60

Query: 75  SPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
            PYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

The following BLAST results are available for this feature:
BLAST of CSPI02G10400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G10400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI79_CUCSA7.5e-5199.06Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1[more]
A0A0A0LNP2_CUCSA9.5e-4690.57Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1[more]
Q8H0R6_CUCSA4.3e-3891.30Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1[more]
BLAST of CSPI02G10400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G10400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668784|ref|XP_004147144.2|1.1e-5099.06PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus][more]
gi|700206487|gb|KGN61606.1|1.4e-4590.57hypothetical protein Csa_2G176690 [Cucumis sativus][more]
gi|525507184|ref|NP_001267631.1|6.1e-3891.30uncharacterized protein LOC101210961 precursor [Cucumis sativus][more]
gi|659121395|ref|XP_008460638.1|2.0e-3689.13PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G10400.1CSPI02G10400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G10400Csa2G176190Cucumber (Chinese Long) v2cpicuB065
CSPI02G10400MELO3C022988Melon (DHL92) v3.5.1cpimeB141
CSPI02G10400MELO3C022988.2Melon (DHL92) v3.6.1cpimedB134
CSPI02G10400CsaV3_2G012840Cucumber (Chinese Long) v3cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G10400Cucurbita maxima (Rimu)cmacpiB240
CSPI02G10400Cucurbita maxima (Rimu)cmacpiB354
CSPI02G10400Cucurbita maxima (Rimu)cmacpiB515
CSPI02G10400Cucurbita maxima (Rimu)cmacpiB591
CSPI02G10400Cucurbita maxima (Rimu)cmacpiB825
CSPI02G10400Cucurbita maxima (Rimu)cmacpiB899
CSPI02G10400Cucurbita moschata (Rifu)cmocpiB503
CSPI02G10400Cucurbita moschata (Rifu)cmocpiB228
CSPI02G10400Cucurbita moschata (Rifu)cmocpiB346
CSPI02G10400Cucurbita moschata (Rifu)cmocpiB580
CSPI02G10400Cucurbita moschata (Rifu)cmocpiB812
CSPI02G10400Cucurbita moschata (Rifu)cmocpiB879
CSPI02G10400Cucumber (Chinese Long) v2cpicuB069
CSPI02G10400Cucumber (Chinese Long) v2cpicuB073
CSPI02G10400Melon (DHL92) v3.5.1cpimeB144
CSPI02G10400Watermelon (Charleston Gray)cpiwcgB141
CSPI02G10400Watermelon (Charleston Gray)cpiwcgB156
CSPI02G10400Watermelon (Charleston Gray)cpiwcgB163
CSPI02G10400Watermelon (97103) v1cpiwmB125
CSPI02G10400Watermelon (97103) v1cpiwmB121
CSPI02G10400Watermelon (97103) v1cpiwmB174
CSPI02G10400Cucurbita pepo (Zucchini)cpecpiB126
CSPI02G10400Cucurbita pepo (Zucchini)cpecpiB241
CSPI02G10400Cucurbita pepo (Zucchini)cpecpiB306
CSPI02G10400Cucurbita pepo (Zucchini)cpecpiB598
CSPI02G10400Cucurbita pepo (Zucchini)cpecpiB716
CSPI02G10400Cucurbita pepo (Zucchini)cpecpiB851
CSPI02G10400Bottle gourd (USVL1VR-Ls)cpilsiB085
CSPI02G10400Bottle gourd (USVL1VR-Ls)cpilsiB125
CSPI02G10400Bottle gourd (USVL1VR-Ls)cpilsiB127
CSPI02G10400Melon (DHL92) v3.6.1cpimedB137
CSPI02G10400Cucumber (Gy14) v2cgybcpiB056
CSPI02G10400Cucumber (Gy14) v2cgybcpiB100
CSPI02G10400Silver-seed gourdcarcpiB0259
CSPI02G10400Silver-seed gourdcarcpiB0265
CSPI02G10400Silver-seed gourdcarcpiB0783
CSPI02G10400Silver-seed gourdcarcpiB0812
CSPI02G10400Silver-seed gourdcarcpiB0995
CSPI02G10400Silver-seed gourdcarcpiB1112
CSPI02G10400Cucumber (Chinese Long) v3cpicucB088
CSPI02G10400Watermelon (97103) v2cpiwmbB133
CSPI02G10400Watermelon (97103) v2cpiwmbB149
CSPI02G10400Watermelon (97103) v2cpiwmbB157
CSPI02G10400Wax gourdcpiwgoB122
CSPI02G10400Wax gourdcpiwgoB142
CSPI02G10400Wax gourdcpiwgoB147
CSPI02G10400Wild cucumber (PI 183967)cpicpiB057
CSPI02G10400Wild cucumber (PI 183967)cpicpiB064
CSPI02G10400Cucumber (Gy14) v1cgycpiB378
CSPI02G10400Cucumber (Gy14) v1cgycpiB565