MELO3C022988.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C022988.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionrepetitive proline-rich cell wall protein 3-like
Locationchr05 : 5615466 .. 5616019 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGCAAAACTCGATCAAAAAGCCACGATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGCTGTGCTTCTTTCCACAACTCAAGCCCTGAAACACCCCTCCACCTCCGACCAAGAAGTGATTCCGACCACCGATGTCACCCAAGGAACGCTCCCGACCACCATCGCCGATCCGAATGAAGAATCCAAATTCTACAGGAGGCCATTTCCCTACAAGAAGCCTTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAATACCCACCATCTTCTCACTAAATGGCATCCCAAACCAAAGTTGAGTCCATGGACAATGTGTTATGTGTTTAATTTCTTTGATAAATAAGTGGTGCTATAAGCTCCAAGTTTTAGGGTAATACTAGAAAGTTCATGAAGTTGGCCTTTTGACTTATGTAATATGTGTTAATCCAAACTTCATATGTGTGATGTATGGATGTATTTTCTCTGTGTTATTGCTTCACTTATCGTTTAATAATCTAAAGTTTGAATGGATTTAATATTTTGTC

mRNA sequence

TAGGCAAAACTCGATCAAAAAGCCACGATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGCTGTGCTTCTTTCCACAACTCAAGCCCTGAAACACCCCTCCACCTCCGACCAAGAAGTGATTCCGACCACCGATGTCACCCAAGGAACGCTCCCGACCACCATCGCCGATCCGAATGAAGAATCCAAATTCTACAGGAGGCCATTTCCCTACAAGAAGCCTTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAATACCCACCATCTTCTCACTAAATGGCATCCCAAACCAAAGTTGAGTCCATGGACAATGTGTTATGTGTTTAATTTCTTTGATAAATAAGTGGTGCTATAAGCTCCAAGTTTTAGGGTAATACTAGAAAGTTCATGAAGTTGGCCTTTTGACTTATGTAATATGTGTTAATCCAAACTTCATATGTGTGATGTATGGATGTATTTTCTCTGTGTTATTGCTTCACTTATCGTTTAATAATCTAAAGTTTGAATGGATTTAATATTTTGTC

Coding sequence (CDS)

ATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGCTGTGCTTCTTTCCACAACTCAAGCCCTGAAACACCCCTCCACCTCCGACCAAGAAGTGATTCCGACCACCGATGTCACCCAAGGAACGCTCCCGACCACCATCGCCGATCCGAATGAAGAATCCAAATTCTACAGGAGGCCATTTCCCTACAAGAAGCCTTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAATACCCACCATCTTCTCACTAA

Protein sequence

MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRPFPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Homology
[Close]
BLAST of MELO3C022988.2 vs. NCBI nr
Match: XP_008460638.1 (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP
Sbjct: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60

Query: 61 FP 63
          FP
Sbjct: 61 FP 62

[Close]
BLAST of MELO3C022988.2 vs. NCBI nr
Match: XP_004147144.2 (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus] >KGN61605.1 hypothetical protein Csa_2G176190 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 9.6e-12
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MFLKY  XXXXXXXXX    ALKHPS S+QEVIPTTDVT G LPTTI DPNEESKFYRRP
Sbjct: 15 MFLKYXXXXXXXXXXXXXXXALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74

Query: 61 FP 63
           P
Sbjct: 75 SP 76

[Close]
BLAST of MELO3C022988.2 vs. NCBI nr
Match: NP_001267631.1 (uncharacterized protein LOC101210961 precursor [Cucumis sativus] >CAD44256.1 proline-rich protein [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MF KYF XXXXXXXXX   QALKHP  S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 1  MFPKYFXXXXXXXXXXXXXQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 61 FP 63
           P
Sbjct: 61 SP 62

[Close]
BLAST of MELO3C022988.2 vs. NCBI nr
Match: KGN61606.1 (hypothetical protein Csa_2G176690 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 7.6e-09
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MF KY  XXXXXXXXX   QALKHP  S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 15 MFPKYXXXXXXXXXXXXXXQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 74

Query: 61 FP 63
           P
Sbjct: 75 SP 76

[Close]
BLAST of MELO3C022988.2 vs. TrEMBL
Match: tr|A0A1S3CE34|A0A1S3CE34_CUCME (repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC103499417 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.3e-20
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP
Sbjct: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60

Query: 61 FP 63
          FP
Sbjct: 61 FP 62

[Close]
BLAST of MELO3C022988.2 vs. TrEMBL
Match: tr|A0A0A0LI79|A0A0A0LI79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MFLKY  XXXXXXXXX    ALKHPS S+QEVIPTTDVT G LPTTI DPNEESKFYRRP
Sbjct: 15 MFLKYXXXXXXXXXXXXXXXALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74

Query: 61 FP 63
           P
Sbjct: 75 SP 76

[Close]
BLAST of MELO3C022988.2 vs. TrEMBL
Match: tr|Q8H0R6|Q8H0R6_CUCSA (Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-10
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MF KYF XXXXXXXXX   QALKHP  S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 1  MFPKYFXXXXXXXXXXXXXQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 61 FP 63
           P
Sbjct: 61 SP 62

[Close]
BLAST of MELO3C022988.2 vs. TrEMBL
Match: tr|A0A0A0LNP2|A0A0A0LNP2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-09
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MFLKYFLXXXXXXXXXSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
          MF KY  XXXXXXXXX   QALKHP  S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 15 MFPKYXXXXXXXXXXXXXXQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 74

Query: 61 FP 63
           P
Sbjct: 75 SP 76

The following BLAST results are available for this feature:
BLAST of MELO3C022988.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460638.11.3e-19100.00PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo][more]
XP_004147144.29.6e-1280.65PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus] >K... [more]
NP_001267631.11.2e-0974.19uncharacterized protein LOC101210961 precursor [Cucumis sativus] >CAD44256.1 pro... [more]
KGN61606.17.6e-0972.58hypothetical protein Csa_2G176690 [Cucumis sativus][more]
BLAST of MELO3C022988.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C022988.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C022988.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CE34|A0A1S3CE34_CUCME8.3e-20100.00repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A0A0LI79|A0A0A0LI79_CUCSA6.4e-1280.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1[more]
tr|Q8H0R6|Q8H0R6_CUCSA7.8e-1074.19Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1[more]
tr|A0A0A0LNP2|A0A0A0LNP2_CUCSA5.1e-0972.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022988.2.1MELO3C022988.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..49

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022988.2Csa2G176190Cucumber (Chinese Long) v2cumedB134
MELO3C022988.2CSPI02G10400Wild cucumber (PI 183967)cpimedB134
MELO3C022988.2CsaV3_2G012840Cucumber (Chinese Long) v3cucmedB136
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022988.2Cucumber (Gy14) v2cgybmedB120
MELO3C022988.2Cucumber (Gy14) v2cgybmedB197
MELO3C022988.2Cucumber (Gy14) v1cgymedB429
MELO3C022988.2Cucumber (Gy14) v1cgymedB620
MELO3C022988.2Cucurbita maxima (Rimu)cmamedB266
MELO3C022988.2Cucurbita maxima (Rimu)cmamedB394
MELO3C022988.2Cucurbita maxima (Rimu)cmamedB548
MELO3C022988.2Cucurbita maxima (Rimu)cmamedB657
MELO3C022988.2Cucurbita maxima (Rimu)cmamedB860
MELO3C022988.2Cucurbita maxima (Rimu)cmamedB946
MELO3C022988.2Cucurbita moschata (Rifu)cmomedB250
MELO3C022988.2Cucurbita moschata (Rifu)cmomedB381
MELO3C022988.2Cucurbita moschata (Rifu)cmomedB539
MELO3C022988.2Cucurbita moschata (Rifu)cmomedB644
MELO3C022988.2Cucurbita moschata (Rifu)cmomedB854
MELO3C022988.2Cucurbita moschata (Rifu)cmomedB935
MELO3C022988.2Cucurbita pepo (Zucchini)cpemedB166
MELO3C022988.2Cucurbita pepo (Zucchini)cpemedB275
MELO3C022988.2Cucurbita pepo (Zucchini)cpemedB362
MELO3C022988.2Cucurbita pepo (Zucchini)cpemedB685
MELO3C022988.2Cucurbita pepo (Zucchini)cpemedB825
MELO3C022988.2Cucurbita pepo (Zucchini)cpemedB944
MELO3C022988.2Wild cucumber (PI 183967)cpimedB221
MELO3C022988.2Cucumber (Chinese Long) v2cumedB220
MELO3C022988.2Melon (DHL92) v3.6.1medmedB144
MELO3C022988.2Bottle gourd (USVL1VR-Ls)lsimedB027
MELO3C022988.2Bottle gourd (USVL1VR-Ls)lsimedB375
MELO3C022988.2Bottle gourd (USVL1VR-Ls)lsimedB379
MELO3C022988.2Watermelon (Charleston Gray)medwcgB376
MELO3C022988.2Watermelon (Charleston Gray)medwcgB378
MELO3C022988.2Watermelon (Charleston Gray)medwcgB390
MELO3C022988.2Watermelon (97103) v1medwmB401
MELO3C022988.2Watermelon (97103) v1medwmB404
MELO3C022988.2Watermelon (97103) v1medwmB418
MELO3C022988.2Silver-seed gourdcarmedB0240
MELO3C022988.2Silver-seed gourdcarmedB0246
MELO3C022988.2Silver-seed gourdcarmedB0760
MELO3C022988.2Silver-seed gourdcarmedB0790
MELO3C022988.2Silver-seed gourdcarmedB0945
MELO3C022988.2Silver-seed gourdcarmedB1060
MELO3C022988.2Cucumber (Chinese Long) v3cucmedB224
MELO3C022988.2Watermelon (97103) v2medwmbB374
MELO3C022988.2Watermelon (97103) v2medwmbB378
MELO3C022988.2Watermelon (97103) v2medwmbB391
MELO3C022988.2Wax gourdmedwgoB453
MELO3C022988.2Wax gourdmedwgoB471
MELO3C022988.2Wax gourdmedwgoB481