CSPI02G10400.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G10400.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProline-rich protein
LocationChr2 : 10479903 .. 10480630 (+)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACTTGCCCTCAAAACACCTACCTCATTAATGGCAAAATAATAACCCCATAAAATGCTATAAAAGGCCACAACCTATGAGGTTCCCAGTAGGAAAAACTCAAACTCCAAAAGCCACAATGTTTCTCAAATACTTCCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACACAAGCCCTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCAACCACCGACGTCACCCACGGAAAGCTCCCGACCACCATCACCGATCCAAACGAAGAATCCAAATTCTACAGGAGGCCGTCTCCCTACAAGAGGCCTTACAAGAGGCCACCCTACAAGAGGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAAATGGCATCCAAAACCAAAGTGGAGGCCATGGACAATTAATGTATCATCTGTTTAATTTCTTTGATAAATAAGTGGTGCTACAAGCTCCAAGGGTAATACTAGGAAGTTCATGATGTTGGCCTTTTGAATTATGTAATATCTGTTAATCCAAACTTCATATGTGTGACATATGGTTTGTATTTTCTGTGTTATTGCTTCACTTATTGTGTAATAATTTAAAGTTTGAATGGATTTAATATTTAGTTTCAAATATGTTAGTCTTCTTTTTATACTCTTTAGATTTAGATATTGAAATTGTACTGATTTCAACATTCAACATGTAGGAGAG

mRNA sequence

ATGAGGTTCCCAGTAGGAAAAACTCAAACTCCAAAAGCCACAATGTTTCTCAAATACTTCCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACACAAGCCCTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCAACCACCGACGTCACCCACGGAAAGCTCCCGACCACCATCACCGATCCAAACGAAGAATCCAAATTCTACAGGAGGCCGTCTCCCTACAAGAGGCCTTACAAGAGGCCACCCTACAAGAGGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAA

Coding sequence (CDS)

ATGAGGTTCCCAGTAGGAAAAACTCAAACTCCAAAAGCCACAATGTTTCTCAAATACTTCCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACACAAGCCCTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCAACCACCGACGTCACCCACGGAAAGCTCCCGACCACCATCACCGATCCAAACGAAGAATCCAAATTCTACAGGAGGCCGTCTCCCTACAAGAGGCCTTACAAGAGGCCACCCTACAAGAGGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAA
Homology
[Close]
BLAST of CSPI02G10400.1 vs. TrEMBL
Match: A0A0A0LI79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.5e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKFYRRPSPYK+PYKRPPYKRYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400.1 vs. TrEMBL
Match: A0A0A0LNP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 9.5e-46
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFP+GKTQT KATMF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKF+RRPSPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400.1 vs. TrEMBL
Match: Q8H0R6_CUCSA (Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.3e-38
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 

Query: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
           MF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTTITDPNEESKF+RRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           SPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of CSPI02G10400.1 vs. NCBI nr
Match: gi|778668784|ref|XP_004147144.2| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKFYRRPSPYK+PYKRPPYKRYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400.1 vs. NCBI nr
Match: gi|700206487|gb|KGN61606.1| (hypothetical protein Csa_2G176690 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60
           MRFP+GKTQT KATMF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFYRRPSPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKF+RRPSPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of CSPI02G10400.1 vs. NCBI nr
Match: gi|525507184|ref|NP_001267631.1| (uncharacterized protein LOC101210961 precursor [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 6.1e-38
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 

Query: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
           MF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTTITDPNEESKF+RRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
           SPYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of CSPI02G10400.1 vs. NCBI nr
Match: gi|659121395|ref|XP_008460638.1| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 

Query: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
           MFLKYFLLLLLA VLL+TTQALKHPS S+QEVIPTTDVT G LPTTI DPNEESKFYRRP
Sbjct: 1   MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60

Query: 75  SPYKRPYKRPPYKRYPPYKKRPPYKKYPPSSH 107
            PYK+PYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

The following BLAST results are available for this feature:
BLAST of CSPI02G10400.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G10400.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI79_CUCSA7.5e-5199.06Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1[more]
A0A0A0LNP2_CUCSA9.5e-4690.57Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1[more]
Q8H0R6_CUCSA4.3e-3891.30Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1[more]
BLAST of CSPI02G10400.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G10400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668784|ref|XP_004147144.2|1.1e-5099.06PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus][more]
gi|700206487|gb|KGN61606.1|1.4e-4590.57hypothetical protein Csa_2G176690 [Cucumis sativus][more]
gi|525507184|ref|NP_001267631.1|6.1e-3891.30uncharacterized protein LOC101210961 precursor [Cucumis sativus][more]
gi|659121395|ref|XP_008460638.1|2.0e-3689.13PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G10400CSPI02G10400gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G10400.1CSPI02G10400.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G10400.1.utr5p1CSPI02G10400.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G10400.1.cds1CSPI02G10400.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G10400.1.utr3p1CSPI02G10400.1.utr3p1three_prime_UTR