CSPI01G25790 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G25790
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 21181869 .. 21182243 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCGCGGAGAGGCAATAGCTTCCAAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACACCAAGACGCAGCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTCTTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

mRNA sequence

ATGTCCCGCGGAGAGGCAATAGCTTCCAAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACACCAAGACGCAGCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTCTTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

Coding sequence (CDS)

ATGTCCCGCGGAGAGGCAATAGCTTCCAAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACACCAAGACGCAGCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTCTTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA
Homology
[Close]
BLAST of CSPI01G25790 vs. TrEMBL
Match: A0A0A0LW98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560850 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-61
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 1 

Query: 1   MSRGEAIASKESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIAS+ESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITPRRSSIHLPTILRRIPSVETKPLLRRQIKGARDDSKGFLDSPAMNLHQARHQQ 120
           SQTRSIT RR SIHLPTILRRIPSVETKPLLRRQIKGARDDSKG LDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]
BLAST of CSPI01G25790 vs. TrEMBL
Match: A0A0A0KDY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G111920 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-19
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITPRRSSIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+ITPR   IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGFLDS 109
           K LLR QIKGA DD+KGFLDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

[Close]
BLAST of CSPI01G25790 vs. NCBI nr
Match: gi|700210907|gb|KGN66003.1| (hypothetical protein Csa_1G560850 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-61
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 1 

Query: 1   MSRGEAIASKESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIAS+ESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITPRRSSIHLPTILRRIPSVETKPLLRRQIKGARDDSKGFLDSPAMNLHQARHQQ 120
           SQTRSIT RR SIHLPTILRRIPSVETKPLLRRQIKGARDDSKG LDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]
BLAST of CSPI01G25790 vs. NCBI nr
Match: gi|700191398|gb|KGN46602.1| (hypothetical protein Csa_6G111920 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 7.4e-19
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITPRRSSIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+ITPR   IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGFLDS 109
           K LLR QIKGA DD+KGFLDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

The following BLAST results are available for this feature:
BLAST of CSPI01G25790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G25790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW98_CUCSA1.9e-6196.77Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560850 PE=4 SV=1[more]
A0A0A0KDY3_CUCSA5.2e-1966.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G111920 PE=4 SV=1[more]
BLAST of CSPI01G25790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G25790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210907|gb|KGN66003.1|2.7e-6196.77hypothetical protein Csa_1G560850 [Cucumis sativus][more]
gi|700191398|gb|KGN46602.1|7.4e-1966.67hypothetical protein Csa_6G111920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G25790.1CSPI01G25790.1mRNA