Csa1G560850 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G560850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 20493135 .. 20493509 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCGCGGAGAGGCAATAGCTTCCGAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACATCAAGACGCATCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTATTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

mRNA sequence

ATGTCCCGCGGAGAGGCAATAGCTTCCGAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACATCAAGACGCATCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTATTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

Coding sequence (CDS)

ATGTCCCGCGGAGAGGCAATAGCTTCCGAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACATCAAGACGCATCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTATTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

Protein sequence

MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQTTPA*
Homology
[Close]
BLAST of Csa1G560850 vs. TrEMBL
Match: A0A0A0LW98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560850 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 8.1e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120
           SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]
BLAST of Csa1G560850 vs. TrEMBL
Match: A0A0A0KDY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G111920 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-19
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1 

Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+IT R I IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGLLDS 109
           K LLR QIKGA DD+KG LDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

[Close]
BLAST of Csa1G560850 vs. NCBI nr
Match: gi|700210907|gb|KGN66003.1| (hypothetical protein Csa_1G560850 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120
           SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]
BLAST of Csa1G560850 vs. NCBI nr
Match: gi|700191398|gb|KGN46602.1| (hypothetical protein Csa_6G111920 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 4.4e-19
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1 

Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+IT R I IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGLLDS 109
           K LLR QIKGA DD+KG LDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

The following BLAST results are available for this feature:
BLAST of Csa1G560850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW98_CUCSA8.1e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560850 PE=4 SV=1[more]
A0A0A0KDY3_CUCSA3.0e-1965.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G111920 PE=4 SV=1[more]
BLAST of Csa1G560850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210907|gb|KGN66003.1|1.2e-64100.00hypothetical protein Csa_1G560850 [Cucumis sativus][more]
gi|700191398|gb|KGN46602.1|4.4e-1965.43hypothetical protein Csa_6G111920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G560850.1Csa1G560850.1mRNA