CsaV3_1G038190 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G038190
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 23985385 .. 23985759 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCGCGGAGAGGCAATAGCTTCCGAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACATCAAGACGCATCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTATTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

mRNA sequence

ATGTCCCGCGGAGAGGCAATAGCTTCCGAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACATCAAGACGCATCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTATTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

Coding sequence (CDS)

ATGTCCCGCGGAGAGGCAATAGCTTCCGAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACATCAAGACGCATCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTATTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

Protein sequence

MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQTTPA

Homology

[Close]

BLAST of CsaV3_1G038190 vs. NCBI nr
Match: KGN66003.1 (hypothetical protein Csa_1G560850 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 5.6e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120
           SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]

BLAST of CsaV3_1G038190 vs. NCBI nr
Match: KGN46602.1 (hypothetical protein Csa_6G111920 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+IT R I IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGLLDS 109
           K LLR QIKGA DD+KG LDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

[Close]

BLAST of CsaV3_1G038190 vs. TrEMBL
Match: tr|A0A0A0LW98|A0A0A0LW98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560850 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.7e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120
           SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]

BLAST of CsaV3_1G038190 vs. TrEMBL
Match: tr|A0A0A0KDY3|A0A0A0KDY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111920 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+IT R I IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGLLDS 109
           K LLR QIKGA DD+KG LDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

The following BLAST results are available for this feature:

BLAST of CsaV3_1G038190 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66003.1	5.6e-63	100.00	hypothetical protein Csa_1G560850 [Cucumis sativus]	[more]
KGN46602.1	1.2e-17	65.43	hypothetical protein Csa_6G111920 [Cucumis sativus]	[more]

BLAST of CsaV3_1G038190 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038190 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LW98\|A0A0A0LW98_CUCSA	3.7e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560850 PE=4 SV=1	[more]
tr\|A0A0A0KDY3\|A0A0A0KDY3_CUCSA	8.1e-18	65.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111920 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G038190.1	CsaV3_1G038190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G038190	CSPI01G25790	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G038190	CsGy1G025080	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G038190	Cucurbita maxima (Rimu)	cmacucB0120
CsaV3_1G038190	Cucumber (Gy14) v1	cgycucB035
CsaV3_1G038190	Cucurbita maxima (Rimu)	cmacucB0062
CsaV3_1G038190	Cucurbita moschata (Rifu)	cmocucB0048
CsaV3_1G038190	Cucurbita moschata (Rifu)	cmocucB0097
CsaV3_1G038190	Cucurbita moschata (Rifu)	cmocucB0109
CsaV3_1G038190	Cucurbita moschata (Rifu)	cmocucB0914
CsaV3_1G038190	Cucurbita pepo (Zucchini)	cpecucB0432
CsaV3_1G038190	Cucurbita pepo (Zucchini)	cpecucB0807
CsaV3_1G038190	Cucurbita pepo (Zucchini)	cpecucB0821
CsaV3_1G038190	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G038190	Bottle gourd (USVL1VR-Ls)	cuclsiB079
CsaV3_1G038190	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G038190	Melon (DHL92) v3.5.1	cucmeB059
CsaV3_1G038190	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G038190	Melon (DHL92) v3.6.1	cucmedB056
CsaV3_1G038190	Watermelon (Charleston Gray)	cucwcgB053
CsaV3_1G038190	Watermelon (97103) v1	cucwmB028
CsaV3_1G038190	Watermelon (97103) v2	cucwmbB044
CsaV3_1G038190	Wax gourd	cucwgoB109