CSPI01G23460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCopper transporter
LocationChr1 : 19029998 .. 19030718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACAAACTCAAAAGATTGCAAAATGGAACAAAAAACAACAGCAATCTTAACTCTTTGTTTTGTAATTTTTCTTTCTGTTTCTTCCAAATCCGACGCTACCAATGTTTTACTTCCCACCCACGACGGCATGCACATGGACCCCCCGCCGCCGCCGATAGCTCCGACGAGCAGAGGGTCCGGCGATGACATGCACACTCACGATATGATGTCATCGGCCATGCACATGACTTTCTTCTGGGGGAAAAACACACAAGTTTTGTTTTCCGGCTGGCCCGGGGATCGGTCCGGCATGTATGCAGTGGCGCTGGTGTTCGTCTTTTTGCTGGCGGTGGCGGTCGAGTGGCTGTCGTGTTGGCGGATGATGACGGAGGTAGGGCCGAGAAATGTGGCGGCCGGAATCGTGCAGACGGCGGTACATGGGATAAGAATGGGGATTGCGTATTTGGTGATGCTTGCTTTGATGTCGTTCAACGGTGGTGTTTTTATCGTGGCCGTCGCCGGACATATGGTTGGGTTTTTGGTTTTTGGAAGCAGAGTTGTGAAGAAGGAGAAATCATCGGCGTACGATCAGGGAACTGTCGATCTTCCATCTAGGGTTTGCTGACTAATTATACATTTGATCATAATTTGTTACATTGTGCTTGTAAACGATTCAAGTGAACTAATTTTGGTTATTTTGGATCTAATATTCTCTTTTTTATTTGAAATATTCATAGGCGGC

mRNA sequence

ATGGAACAAAAAACAACAGCAATCTTAACTCTTTGTTTTGTAATTTTTCTTTCTGTTTCTTCCAAATCCGACGCTACCAATGTTTTACTTCCCACCCACGACGGCATGCACATGGACCCCCCGCCGCCGCCGATAGCTCCGACGAGCAGAGGGTCCGGCGATGACATGCACACTCACGATATGATGTCATCGGCCATGCACATGACTTTCTTCTGGGGGAAAAACACACAAGTTTTGTTTTCCGGCTGGCCCGGGGATCGGTCCGGCATGTATGCAGTGGCGCTGGTGTTCGTCTTTTTGCTGGCGGTGGCGGTCGAGTGGCTGTCGTGTTGGCGGATGATGACGGAGGTAGGGCCGAGAAATGTGGCGGCCGGAATCGTGCAGACGGCGGTACATGGGATAAGAATGGGGATTGCGTATTTGGTGATGCTTGCTTTGATGTCGTTCAACGGTGGTGTTTTTATCGTGGCCGTCGCCGGACATATGGTTGGGTTTTTGGTTTTTGGAAGCAGAGTTGTGAAGAAGGAGAAATCATCGGCGTACGATCAGGGAACTGTCGATCTTCCATCTAGGGTTTGCTGA

Coding sequence (CDS)

ATGGAACAAAAAACAACAGCAATCTTAACTCTTTGTTTTGTAATTTTTCTTTCTGTTTCTTCCAAATCCGACGCTACCAATGTTTTACTTCCCACCCACGACGGCATGCACATGGACCCCCCGCCGCCGCCGATAGCTCCGACGAGCAGAGGGTCCGGCGATGACATGCACACTCACGATATGATGTCATCGGCCATGCACATGACTTTCTTCTGGGGGAAAAACACACAAGTTTTGTTTTCCGGCTGGCCCGGGGATCGGTCCGGCATGTATGCAGTGGCGCTGGTGTTCGTCTTTTTGCTGGCGGTGGCGGTCGAGTGGCTGTCGTGTTGGCGGATGATGACGGAGGTAGGGCCGAGAAATGTGGCGGCCGGAATCGTGCAGACGGCGGTACATGGGATAAGAATGGGGATTGCGTATTTGGTGATGCTTGCTTTGATGTCGTTCAACGGTGGTGTTTTTATCGTGGCCGTCGCCGGACATATGGTTGGGTTTTTGGTTTTTGGAAGCAGAGTTGTGAAGAAGGAGAAATCATCGGCGTACGATCAGGGAACTGTCGATCTTCCATCTAGGGTTTGCTGA
Homology
[Close]
BLAST of CSPI01G23460 vs. Swiss-Prot
Match: COPT2_ARATH (Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-37
Identity = 88/163 (53.99%), Postives = 109/163 (66.87%), Query Frame = 1 

Query: 33  HDGMHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYA 92
           HD MH  PPP   +P+S    +    H MM   MHMTFFWGKNT+VLFSGWPG  SGMYA
Sbjct: 3   HDHMHDMPPP---SPSSSSMSNHTTPHMMM---MHMTFFWGKNTEVLFSGWPGTSSGMYA 62

Query: 93  VALVFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGG 152
           + L+ +FLLAV  EWL+   ++   G  N AAG+ QTAV+ ++ G++YLVMLA+MSFN G
Sbjct: 63  LCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAG 122

Query: 153 VFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDL--PSRVC 194
           VFIVA+AG+ VGF +FGS   KK      DQ T +L  PS  C
Sbjct: 123 VFIVAIAGYGVGFFLFGSTTFKKPSD---DQKTAELLPPSSGC 156

[Close]
BLAST of CSPI01G23460 vs. Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-35
Identity = 84/169 (49.70%), Postives = 113/169 (66.86%), Query Frame = 1 

Query: 33  HDGMHMDPPPP------PIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGD 92
           HD MH  P P       P +  + GS ++   H  M   MHMTFFWGKNT+VLFSGWPG 
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 93  RSGMYAVALVFVFLLAVAVEWLSCWRMM--TEVGPRNVAAGIVQTAVHGIRMGIAYLVML 152
            SGMYA+ L+FVF LAV  EWL+   ++  +     N AAG++QTAV+ +R+G+AYLVML
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 153 ALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC 194
           A+MSFN GVF+VA+AGH VGF++FGS+     ++++ D+ T  +P   C
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTF---RNTSDDRKTNYVPPSGC 168

[Close]
BLAST of CSPI01G23460 vs. Swiss-Prot
Match: COPT6_ARATH (Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 75/132 (56.82%), Postives = 96/132 (72.73%), Query Frame = 1 

Query: 43  PPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLA 102
           PP +P+S  +    HT+  M   MHMTFFWGKNT++LFSGWPG   GMY + L+ VFLLA
Sbjct: 7   PPSSPSSMVN----HTNSNMIM-MHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLA 66

Query: 103 VAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHM 162
           V VEWL+   ++   G  + A G+VQTAV+ ++ G+AYLVMLA+MSFNGGVFIVA+AG  
Sbjct: 67  VIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFA 126

Query: 163 VGFLVFGSRVVK 175
           VGF++FGS   K
Sbjct: 127 VGFMLFGSTAFK 133

[Close]
BLAST of CSPI01G23460 vs. Swiss-Prot
Match: COPT1_ORYSJ (Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.7e-28
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 67  HMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWL------SCWRMMTEVGPR 126
           HMTFFWGKN++VLF+ WPG R GMYA+AL+FVF LAV VE+L      +C   +    P 
Sbjct: 34  HMTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLGSRRADACLAALARRAP- 93

Query: 127 NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVF 169
             A G+ + AVH +R+G+AYL+MLALMSFNGGVF+VAVAGH  GFL F
Sbjct: 94  -AAGGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 139

[Close]
BLAST of CSPI01G23460 vs. Swiss-Prot
Match: COPT2_ORYSJ (Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.0e-28
Identity = 68/137 (49.64%), Postives = 88/137 (64.23%), Query Frame = 1 

Query: 34  DGMHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAV 93
           +GM M PPP P+                 +  MHMTFFWGKNT+VLF+ WPG R GMYA+
Sbjct: 6   NGMAMPPPPAPVKK---------------ARYMHMTFFWGKNTEVLFTLWPGARGGMYAL 65

Query: 94  ALVFVFLLAVAVEWLSCWRMMTEVGPRNV--AAGIVQTAVHGIRMGIAYLVMLALMSFNG 153
           A++F+F LAV +E+     +   +  R    AA  ++TAVH +R+G+AYL+MLALMSFNG
Sbjct: 66  AILFMFALAVLLEFRGYRVLEARLARRRAPRAAAALRTAVHAVRVGVAYLIMLALMSFNG 125

Query: 154 GVFIVAVAGHMVGFLVF 169
           GVF+  VAGH  GFL F
Sbjct: 126 GVFLAIVAGHAAGFLAF 127

[Close]
BLAST of CSPI01G23460 vs. TrEMBL
Match: A0A0A0LY50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G526820 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.1e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   MEQKTTAILTLCFVIFLSVSSKSDATNVLLPTHDGMHMDPPPPPIAPTSRGSGDDMHTHD 60
           MEQKTTAILTLCFVIFLSVSSKSDATNVLLPTHDGMHMDPPPPPIAPTSRGSGDDMHTHD
Sbjct: 1   MEQKTTAILTLCFVIFLSVSSKSDATNVLLPTHDGMHMDPPPPPIAPTSRGSGDDMHTHD 60

Query: 61  MMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEVGPR 120
           MMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEVGPR
Sbjct: 61  MMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEVGPR 120

Query: 121 NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA 180
           NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA
Sbjct: 121 NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA 180

Query: 181 YDQGTVDLPSRVC 194
           YDQGTVDLPSRVC
Sbjct: 181 YDQGTVDLPSRVC 193

[Close]
BLAST of CSPI01G23460 vs. TrEMBL
Match: W9QEG8_9ROSA (Copper transporter 6 OS=Morus notabilis GN=L484_006014 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.4e-39
Identity = 91/159 (57.23%), Postives = 112/159 (70.44%), Query Frame = 1 

Query: 34  DGMHMDPPPPPIAPTSRGSGDDMHT-HDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYA 93
           DGM M PPPPP + +S  S   MH  H+MM   MHMTFFWG N+++LFSGWPG R+GMY 
Sbjct: 2   DGMDMTPPPPPPSSSSSMSNHSMHNDHNMM---MHMTFFWGSNSEILFSGWPGTRTGMYV 61

Query: 94  VALVFVFLLAVAVEWLSCWRMMTEV--GPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFN 153
           +AL+FVF+LAV VEWLS  R +         V AG++QT +H +R+G+AYLVMLA+MSFN
Sbjct: 62  LALIFVFVLAVLVEWLSHCRFIKPAAGSASRVRAGLLQTLLHALRLGLAYLVMLAVMSFN 121

Query: 154 GGVFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLP 190
            GVF+V VAGH VGFLVFGS V K+      D+   DLP
Sbjct: 122 AGVFLVVVAGHAVGFLVFGSAVFKRGDG---DKVGTDLP 154

[Close]
BLAST of CSPI01G23460 vs. TrEMBL
Match: E9LK42_VITVI (Copper transporter OS=Vitis vinifera GN=CTr5 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-38
Identity = 90/157 (57.32%), Postives = 114/157 (72.61%), Query Frame = 1 

Query: 33  HDGMHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYA 92
           HD MHM PPP      S      MH  +MM   MHMTF+WGK  ++LFSGWPG RSGMYA
Sbjct: 5   HDHMHMSPPPANSTGMS-----PMHHMEMM---MHMTFYWGKEAEILFSGWPGARSGMYA 64

Query: 93  VALVFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGG 152
           +AL+ VF++ + VEWLS  R++ + G  + AAG+VQT +H IR+G+AY+VMLALMSFNGG
Sbjct: 65  LALIVVFVMGIIVEWLSYCRLI-KPGSTHAAAGLVQTLLHTIRIGLAYMVMLALMSFNGG 124

Query: 153 VFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLP 190
           VF+VAVAGH VGFLVFGSRV +  +  + ++ T DLP
Sbjct: 125 VFLVAVAGHAVGFLVFGSRVCRGSEMVSLEK-TSDLP 151

[Close]
BLAST of CSPI01G23460 vs. TrEMBL
Match: V4UFV7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029475mg PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.5e-38
Identity = 91/163 (55.83%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 34  DGMHMDP---PPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGM 93
           DGMH D     PP     +  +G  MH H+MM    HMTFFWGKN+++LFSGWPG  SGM
Sbjct: 2   DGMHHDHGSMSPPMSMNNTNNTGTMMHHHNMM----HMTFFWGKNSEILFSGWPGTSSGM 61

Query: 94  YAVALVFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFN 153
           YA+AL+ VF+LAV VEWLS  ++M +    +VAAG++QT +H IR+G+A+LVMLA+MSFN
Sbjct: 62  YALALIVVFVLAVLVEWLSHCKLM-KPDANHVAAGLIQTLLHAIRVGLAFLVMLAIMSFN 121

Query: 154 GGVFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC 194
           GGVF+VAVAGH  GF +FGSRV  K   S+    T DLP   C
Sbjct: 122 GGVFLVAVAGHTFGFFIFGSRVFNK---SSPPPKTSDLPPMSC 156

[Close]
BLAST of CSPI01G23460 vs. TrEMBL
Match: B9HPB1_POPTR (Copper transporter family protein OS=Populus trichocarpa GN=POPTR_0009s04360g PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.9e-38
Identity = 89/159 (55.97%), Postives = 114/159 (71.70%), Query Frame = 1 

Query: 31  PTHDGMHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGM 90
           P H    M PPP     ++  +G D   H MM+   HMTFFWGK+T +LFSGWPG  +GM
Sbjct: 3   PDHHLPGMSPPP-----STPMNGTDGMDHKMMT---HMTFFWGKDTLILFSGWPGTSTGM 62

Query: 91  YAVALVFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFN 150
           Y +ALVF+F+LAV VEWLS  R++ + G  NVAAG++Q  +H +R+G+AY+VMLA+MSFN
Sbjct: 63  YVLALVFIFVLAVLVEWLSHCRLV-KPGSNNVAAGLIQALMHAVRVGLAYMVMLAVMSFN 122

Query: 151 GGVFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLP 190
           GGVFIVAVAGH+VGF +FGSRV K  +   Y + T DLP
Sbjct: 123 GGVFIVAVAGHLVGFFIFGSRVFKDTEMPPYHK-TSDLP 151

[Close]
BLAST of CSPI01G23460 vs. TAIR10
Match: AT3G46900.1 (AT3G46900.1 copper transporter 2)

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 88/163 (53.99%), Postives = 109/163 (66.87%), Query Frame = 1 

Query: 33  HDGMHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYA 92
           HD MH  PPP   +P+S    +    H MM   MHMTFFWGKNT+VLFSGWPG  SGMYA
Sbjct: 3   HDHMHDMPPP---SPSSSSMSNHTTPHMMM---MHMTFFWGKNTEVLFSGWPGTSSGMYA 62

Query: 93  VALVFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGG 152
           + L+ +FLLAV  EWL+   ++   G  N AAG+ QTAV+ ++ G++YLVMLA+MSFN G
Sbjct: 63  LCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAG 122

Query: 153 VFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDL--PSRVC 194
           VFIVA+AG+ VGF +FGS   KK      DQ T +L  PS  C
Sbjct: 123 VFIVAIAGYGVGFFLFGSTTFKKPSD---DQKTAELLPPSSGC 156

[Close]
BLAST of CSPI01G23460 vs. TAIR10
Match: AT5G59030.1 (AT5G59030.1 copper transporter 1)

HSP 1 Score: 151.0 bits (380), Expect = 7.6e-37
Identity = 84/169 (49.70%), Postives = 113/169 (66.86%), Query Frame = 1 

Query: 33  HDGMHMDPPPP------PIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGD 92
           HD MH  P P       P +  + GS ++   H  M   MHMTFFWGKNT+VLFSGWPG 
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 93  RSGMYAVALVFVFLLAVAVEWLSCWRMM--TEVGPRNVAAGIVQTAVHGIRMGIAYLVML 152
            SGMYA+ L+FVF LAV  EWL+   ++  +     N AAG++QTAV+ +R+G+AYLVML
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 153 ALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC 194
           A+MSFN GVF+VA+AGH VGF++FGS+     ++++ D+ T  +P   C
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTF---RNTSDDRKTNYVPPSGC 168

[Close]
BLAST of CSPI01G23460 vs. TAIR10
Match: AT2G26975.1 (AT2G26975.1 Ctr copper transporter family)

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-33
Identity = 75/132 (56.82%), Postives = 96/132 (72.73%), Query Frame = 1 

Query: 43  PPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLA 102
           PP +P+S  +    HT+  M   MHMTFFWGKNT++LFSGWPG   GMY + L+ VFLLA
Sbjct: 7   PPSSPSSMVN----HTNSNMIM-MHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLA 66

Query: 103 VAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHM 162
           V VEWL+   ++   G  + A G+VQTAV+ ++ G+AYLVMLA+MSFNGGVFIVA+AG  
Sbjct: 67  VIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFA 126

Query: 163 VGFLVFGSRVVK 175
           VGF++FGS   K
Sbjct: 127 VGFMLFGSTAFK 133

[Close]
BLAST of CSPI01G23460 vs. TAIR10
Match: AT5G59040.1 (AT5G59040.1 copper transporter 3)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 1 

Query: 34  DGMHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAV 93
           +GM    P  P AP+        H H  M   MHMTFFWGK T+VLF GWPG    MY V
Sbjct: 2   NGMSGSSPAAP-APSPSSFFQHRHRHGGM---MHMTFFWGKTTEVLFDGWPGTSLKMYWV 61

Query: 94  ALVFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGV 153
            L  +F+++   E LS    M   GP ++  G++QTAV+ +R  ++YLVMLA+MSFNGGV
Sbjct: 62  CLAVIFVISAFSECLSRCGFMKS-GPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGV 121

Query: 154 FIVAVAGHMVGFLVFGSRVVKKEKSSAYDQ 184
           F+ A+AG  +GF++FGSR  +   S+++ +
Sbjct: 122 FVAAMAGFGLGFMIFGSRAFRATSSNSHTE 146

[Close]
BLAST of CSPI01G23460 vs. TAIR10
Match: AT2G37925.1 (AT2G37925.1 copper transporter 4)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-24
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1 

Query: 64  SAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEV--GPRN 123
           S +H TF+WG N QVLFSGWPG   GMYA+AL+FVF LA   EWL+     + +  G   
Sbjct: 28  SLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADK 87

Query: 124 VAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVK 175
           +A    +TA++ ++ G +YLV+LA++SFNGGVF+ A+ GH +GF VF  R  +
Sbjct: 88  LAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFR 140

[Close]
BLAST of CSPI01G23460 vs. NCBI nr
Match: gi|700210666|gb|KGN65762.1| (hypothetical protein Csa_1G526820 [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 3.1e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   MEQKTTAILTLCFVIFLSVSSKSDATNVLLPTHDGMHMDPPPPPIAPTSRGSGDDMHTHD 60
           MEQKTTAILTLCFVIFLSVSSKSDATNVLLPTHDGMHMDPPPPPIAPTSRGSGDDMHTHD
Sbjct: 1   MEQKTTAILTLCFVIFLSVSSKSDATNVLLPTHDGMHMDPPPPPIAPTSRGSGDDMHTHD 60

Query: 61  MMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEVGPR 120
           MMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEVGPR
Sbjct: 61  MMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEVGPR 120

Query: 121 NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA 180
           NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA
Sbjct: 121 NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA 180

Query: 181 YDQGTVDLPSRVC 194
           YDQGTVDLPSRVC
Sbjct: 181 YDQGTVDLPSRVC 193

[Close]
BLAST of CSPI01G23460 vs. NCBI nr
Match: gi|659115181|ref|XP_008457428.1| (PREDICTED: copper transporter 2-like [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 4.4e-95
Identity = 178/193 (92.23%), Postives = 184/193 (95.34%), Query Frame = 1 

Query: 1   MEQKTTAILTLCFVIFLSVSSKSDATNVLLPTHDGMHMDPPPPPIAPTSRGSGDDMHTHD 60
           MEQK T IL LCFVIFLSV SKS+ATNVL PTHDGMHMD PPPP++PTSRGSGDD+HTHD
Sbjct: 1   MEQK-TTILILCFVIFLSVFSKSNATNVLFPTHDGMHMDSPPPPMSPTSRGSGDDLHTHD 60

Query: 61  MMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMTEVGPR 120
           MMS AMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWR+MTE GPR
Sbjct: 61  MMSPAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRVMTEAGPR 120

Query: 121 NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA 180
           NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA
Sbjct: 121 NVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRVVKKEKSSA 180

Query: 181 YDQGTVDLPSRVC 194
           YDQG+ DLPSRVC
Sbjct: 181 YDQGSADLPSRVC 192

[Close]
BLAST of CSPI01G23460 vs. NCBI nr
Match: gi|778661577|ref|XP_004145276.2| (PREDICTED: copper transporter 6-like [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 1.2e-84
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 36  MHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 95
           MHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL
Sbjct: 1   MHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60

Query: 96  VFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 155
           VFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI
Sbjct: 61  VFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 120

Query: 156 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC 194
           VAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC
Sbjct: 121 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC 158

[Close]
BLAST of CSPI01G23460 vs. NCBI nr
Match: gi|743865571|ref|XP_011032214.1| (PREDICTED: copper transporter 6-like [Populus euphratica])

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 93/159 (58.49%), Postives = 114/159 (71.70%), Query Frame = 1 

Query: 31  PTHDGMHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGM 90
           P H    M PPPP    T     D MH H MM   MHMTFFWGK+T +LFSGWPG  +GM
Sbjct: 3   PDHRMPGMSPPPPS---TPMNGTDGMH-HKMM---MHMTFFWGKDTLILFSGWPGTSTGM 62

Query: 91  YAVALVFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFN 150
           Y +ALVF+F+LAV VEWLS  R++ + G  NVAAG++Q  +H +R+G+AY+VMLA+MSFN
Sbjct: 63  YVLALVFIFVLAVLVEWLSHCRLV-KPGTNNVAAGLIQALMHAVRVGLAYMVMLAVMSFN 122

Query: 151 GGVFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLP 190
           GGVFIVAVAGH+VGFL+FGSRV K  +   Y +   DLP
Sbjct: 123 GGVFIVAVAGHLVGFLIFGSRVFKDTEMPPYHK-AFDLP 152

[Close]
BLAST of CSPI01G23460 vs. NCBI nr
Match: gi|703067098|ref|XP_010087879.1| (Copper transporter 6 [Morus notabilis])

HSP 1 Score: 169.1 bits (427), Expect = 7.7e-39
Identity = 91/159 (57.23%), Postives = 112/159 (70.44%), Query Frame = 1 

Query: 34  DGMHMDPPPPPIAPTSRGSGDDMHT-HDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYA 93
           DGM M PPPPP + +S  S   MH  H+MM   MHMTFFWG N+++LFSGWPG R+GMY 
Sbjct: 2   DGMDMTPPPPPPSSSSSMSNHSMHNDHNMM---MHMTFFWGSNSEILFSGWPGTRTGMYV 61

Query: 94  VALVFVFLLAVAVEWLSCWRMMTEV--GPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFN 153
           +AL+FVF+LAV VEWLS  R +         V AG++QT +H +R+G+AYLVMLA+MSFN
Sbjct: 62  LALIFVFVLAVLVEWLSHCRFIKPAAGSASRVRAGLLQTLLHALRLGLAYLVMLAVMSFN 121

Query: 154 GGVFIVAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLP 190
            GVF+V VAGH VGFLVFGS V K+      D+   DLP
Sbjct: 122 AGVFLVVVAGHAVGFLVFGSAVFKRGDG---DKVGTDLP 154

The following BLAST results are available for this feature:
BLAST of CSPI01G23460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COPT2_ARATH2.5e-3753.99Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1[more]
COPT1_ARATH1.4e-3549.70Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2[more]
COPT6_ARATH1.8e-3256.82Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1[more]
COPT1_ORYSJ4.7e-2860.19Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1[more]
COPT2_ORYSJ8.0e-2849.64Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1[more]
BLAST of CSPI01G23460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY50_CUCSA2.1e-104100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G526820 PE=4 SV=1[more]
W9QEG8_9ROSA5.4e-3957.23Copper transporter 6 OS=Morus notabilis GN=L484_006014 PE=4 SV=1[more]
E9LK42_VITVI2.7e-3857.32Copper transporter OS=Vitis vinifera GN=CTr5 PE=2 SV=1[more]
V4UFV7_9ROSI4.5e-3855.83Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029475mg PE=4 SV=1[more]
B9HPB1_POPTR5.9e-3855.97Copper transporter family protein OS=Populus trichocarpa GN=POPTR_0009s04360g PE... [more]
BLAST of CSPI01G23460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46900.11.4e-3853.99 copper transporter 2[more]
AT5G59030.17.6e-3749.70 copper transporter 1[more]
AT2G26975.11.0e-3356.82 Ctr copper transporter family[more]
AT5G59040.11.1e-2744.67 copper transporter 3[more]
AT2G37925.11.9e-2448.67 copper transporter 4[more]
BLAST of CSPI01G23460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210666|gb|KGN65762.1|3.1e-104100.00hypothetical protein Csa_1G526820 [Cucumis sativus][more]
gi|659115181|ref|XP_008457428.1|4.4e-9592.23PREDICTED: copper transporter 2-like [Cucumis melo][more]
gi|778661577|ref|XP_004145276.2|1.2e-84100.00PREDICTED: copper transporter 6-like [Cucumis sativus][more]
gi|743865571|ref|XP_011032214.1|2.0e-3958.49PREDICTED: copper transporter 6-like [Populus euphratica][more]
gi|703067098|ref|XP_010087879.1|7.7e-3957.23Copper transporter 6 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Vocabulary: Molecular Function
TermDefinition
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0035434copper ion transmembrane transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035434 copper ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005375 copper ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23460.1CSPI01G23460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007274Ctr copper transporterPANTHERPTHR12483SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERScoord: 33..193
score: 9.9
IPR007274Ctr copper transporterPFAMPF04145Ctrcoord: 68..168
score: 4.0
NoneNo IPR availablePANTHERPTHR12483:SF45SUBFAMILY NOT NAMEDcoord: 33..193
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23460Cla008202Watermelon (97103) v1cpiwmB023
CSPI01G23460Cla017944Watermelon (97103) v1cpiwmB004
CSPI01G23460Csa1G526820Cucumber (Chinese Long) v2cpicuB001
CSPI01G23460Csa3G733240Cucumber (Chinese Long) v2cpicuB028
CSPI01G23460MELO3C020592Melon (DHL92) v3.5.1cpimeB025
CSPI01G23460MELO3C009211Melon (DHL92) v3.5.1cpimeB065
CSPI01G23460ClCG10G021610Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23460ClCG03G001130Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23460Lsi02G013230Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23460MELO3C020592.2Melon (DHL92) v3.6.1cpimedB024
CSPI01G23460MELO3C009211.2Melon (DHL92) v3.6.1cpimedB057
CSPI01G23460CsaV3_3G034410Cucumber (Chinese Long) v3cpicucB032
CSPI01G23460CsaV3_1G034650Cucumber (Chinese Long) v3cpicucB008
CSPI01G23460CsaV3_1G035760Cucumber (Chinese Long) v3cpicucB000
CSPI01G23460Cla97C03G051980Watermelon (97103) v2cpiwmbB044
CSPI01G23460Cla97C10G204870Watermelon (97103) v2cpiwmbB015
CSPI01G23460Bhi08G000461Wax gourdcpiwgoB045
CSPI01G23460Cucsa.146630Cucumber (Gy14) v1cgycpiB214
CSPI01G23460Cucsa.175910Cucumber (Gy14) v1cgycpiB277
CSPI01G23460CmaCh01G006310Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23460CmaCh06G002660Cucurbita maxima (Rimu)cmacpiB824
CSPI01G23460CmoCh01G006610Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23460CmoCh13G000930Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23460Cp4.1LG02g11570Cucurbita pepo (Zucchini)cpecpiB537
CSPI01G23460Cp4.1LG20g08270Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23460CsGy3G029640Cucumber (Gy14) v2cgybcpiB097
CSPI01G23460CsGy1G022930Cucumber (Gy14) v2cgybcpiB002
CSPI01G23460Carg12398Silver-seed gourdcarcpiB0476
CSPI01G23460Carg20628Silver-seed gourdcarcpiB0415
CSPI01G23460Carg01074Silver-seed gourdcarcpiB0177
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI01G23460CSPI03G31810Wild cucumber (PI 183967)cpicpiB019
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23460Wild cucumber (PI 183967)cpicpiB040
CSPI01G23460Cucumber (Gy14) v1cgycpiB254
CSPI01G23460Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23460Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23460Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23460Cucurbita moschata (Rifu)cmocpiB811
CSPI01G23460Bottle gourd (USVL1VR-Ls)cpilsiB052
CSPI01G23460Silver-seed gourdcarcpiB1034
CSPI01G23460Cucumber (Chinese Long) v3cpicucB046
CSPI01G23460Watermelon (97103) v2cpiwmbB086
CSPI01G23460Wax gourdcpiwgoB048