CSPI01G20070 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G20070
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	F-box family protein
Location	Chr1 : 15839947 .. 15840687 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGTTCTCTTCGCTACCGGAGGGAGTAATAGCCAACATCTTGTCACTGACGTCTCCATTGGATAACTGCCGGTTATCGGCGGTTTCCTGGACTTTTCATGCGGCGGCCCAGTCTGATGTTGCCTGGGAGAGGTTTATTCCTTCAGATTACCACCTTTTAATCTCTCGGATGAATCCTACCTCCAGTTCCAAGAAGGATATTTTCTTCTCCCTTTCCGATACTCCGCTGCTCATTGATGACGGCAAACAGGTAACCTCCCCATTTCCTCAATTTCTCTAAACTAAAATCGGAGTTTTATGACTTCTCGGCCGACTAAAGGCCTTTTAAGTAGAGGGTTTATGTATACCCTACCCTTTCTAAACCCTAAGTTCAAACTTGTAATAACTATAAACAAATAGAAATTAGGTTAGTCATTGGGAGGTCGAAGGCATTCCGACGCACACATTGTGCATATTATTTGATAGAATACACACTTGTACCAGTCTTATTAACAAATCACCAGAATGCCATTGGTTTATATGTACATTTTTGTCACTTGTTGAATCAGCTCTGAAGTTGTCCTGTATTCTCTCTTTTGTATTATATTCTTCAATAATTCGTATGTGGCAGAGCTTTTCATTGGACATATGGAGTGGAAAAAAATGCATAATGCTCGGAGCAAGGGACCTGTCGATTTCTGGGAGTGATACCTCTTCCCTTTGGAAATGGGTACCTCATCAAGGGTCAAGGTTTTAA

mRNA sequence

ATGGTTGAGTTCTCTTCGCTACCGGAGGGAGTAATAGCCAACATCTTGTCACTGACGTCTCCATTGGATAACTGCCGGTTATCGGCGGTTTCCTGGACTTTTCATGCGGCGGCCCAGTCTGATGTTGCCTGGGAGAGGTTTATTCCTTCAGATTACCACCTTTTAATCTCTCGGATGAATCCTACCTCCAGTTCCAAGAAGGATATTTTCTTCTCCCTTTCCGATACTCCGCTGCTCATTGATGACGGCAAACAGAGCTTTTCATTGGACATATGGAGTGGAAAAAAATGCATAATGCTCGGAGCAAGGGACCTGTCGATTTCTGGGAGTGATACCTCTTCCCTTTGGAAATGGGTACCTCATCAAGGGTCAAGGTTTTAA

Coding sequence (CDS)

ATGGTTGAGTTCTCTTCGCTACCGGAGGGAGTAATAGCCAACATCTTGTCACTGACGTCTCCATTGGATAACTGCCGGTTATCGGCGGTTTCCTGGACTTTTCATGCGGCGGCCCAGTCTGATGTTGCCTGGGAGAGGTTTATTCCTTCAGATTACCACCTTTTAATCTCTCGGATGAATCCTACCTCCAGTTCCAAGAAGGATATTTTCTTCTCCCTTTCCGATACTCCGCTGCTCATTGATGACGGCAAACAGAGCTTTTCATTGGACATATGGAGTGGAAAAAAATGCATAATGCTCGGAGCAAGGGACCTGTCGATTTCTGGGAGTGATACCTCTTCCCTTTGGAAATGGGTACCTCATCAAGGGTCAAGGTTTTAA

Homology

[Close]

BLAST of CSPI01G20070 vs. Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 6.4e-26
Identity = 61/122 (50.00%), Postives = 85/122 (69.67%), Query Frame = 1


Query: 6   SLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTSSS 65
           SLPEG I+NI+S TSP D C  +AVS  F +A +SD+ WE+F+P+DY  LI+  +   SS
Sbjct: 26  SLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLIT-PSRVFSS 85

Query: 66  KKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISG-SDTSSLWKWVPHQGS 125
           KK+++FSL + PLLI+DGK S  L+  SGK+CIML A  +++S  +D S  + W+P   S
Sbjct: 86  KKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPES 145

Query: 126 RF 127
           RF
Sbjct: 146 RF 146

[Close]

BLAST of CSPI01G20070 vs. Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-25
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 4   FSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTS 63
           F  LPE  I+NI+S TSP D C  ++VS TF +A  SD  W++F+P +Y  L+SR +   
Sbjct: 61  FDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR-SRVF 120

Query: 64  SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVPHQG 123
           +SKK+++F+L   P+LI+DGK+SF L+  SGK+CIML +++L I+   +   W+W+    
Sbjct: 121 ASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPE 180

Query: 124 SRF 127
           SRF
Sbjct: 181 SRF 182

[Close]

BLAST of CSPI01G20070 vs. Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.0e-25
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1


Query: 4   FSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTS 63
           F S PE  I+ I+S T+P D C  + VS TF +  +SD+ WE+F+P+DY  LI       
Sbjct: 14  FDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSR-VF 73

Query: 64  SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVPHQG 123
           SSKK+++FSL + P+L DD K+S  L+  SGK+C+ML A +LSI   D    W+W+P   
Sbjct: 74  SSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPE 133

Query: 124 SRF 127
           SRF
Sbjct: 134 SRF 135

[Close]

BLAST of CSPI01G20070 vs. Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 2   VEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNP 61
           + F  LPE  IA ++S TSP D CR+SAVS    +AA S+  WERF+PSDY + I   + 
Sbjct: 1   MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDN-SL 60

Query: 62  TSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVPH 121
           +  S K +F    ++PLLI+DG+ SF ++  SGKKC ML AR L I   D+   W WV  
Sbjct: 61  SRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 120

Query: 122 QGSRF 127
             SRF
Sbjct: 121 PDSRF 124

[Close]

BLAST of CSPI01G20070 vs. Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 4   FSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTS 63
           F  LPE  I+NI+S TSP D C  ++VS +F  A Q D  WE+F+PS+Y  LI       
Sbjct: 45  FDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWR-VF 104

Query: 64  SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWV 120
           SSKKD++F+L   P+L++DGK+SF L+  SGKKC++L A++L I+G +    W+W+
Sbjct: 105 SSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWI 159

[Close]

BLAST of CSPI01G20070 vs. TrEMBL
Match: A0A0A0LZQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 5.7e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN 60
           MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN
Sbjct: 26  MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN 85

Query: 61  PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP 120
           PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP
Sbjct: 86  PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP 145

Query: 121 HQGSR 126
           HQGSR
Sbjct: 146 HQGSR 150

[Close]

BLAST of CSPI01G20070 vs. TrEMBL
Match: A0A0A0LWS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.1e-38
Identity = 83/131 (63.36%), Postives = 97/131 (74.05%), Query Frame = 1


Query: 3   EFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPT 62
           +FSSLPEGV+A ILS T+P D CR S VS TF AAAQSD+ W+ F+P+D+ +LISR  P+
Sbjct: 12  DFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDSFLPTDWEILISRRKPS 71

Query: 63  -------SSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSL 122
                  SSSKK IFFSL DTPL+IDDG +SFSLD  SGKKCIMLGAR+LSI  SD  + 
Sbjct: 72  NLNFDPISSSKKGIFFSLCDTPLIIDDGNKSFSLDKCSGKKCIMLGARELSIIWSDMPAY 131

Query: 123 WKWVPHQGSRF 127
           W W PH  SRF
Sbjct: 132 WTWEPHPESRF 142

[Close]

BLAST of CSPI01G20070 vs. TrEMBL
Match: A0A0A0LU29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.5e-37
Identity = 84/130 (64.62%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 4   FSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISR----- 63
           FSSLPEGVIANILSLT+PLD CR SAVS  FHAAAQSD+ W+ F+P+D    ISR     
Sbjct: 10  FSSLPEGVIANILSLTTPLDVCRSSAVSRAFHAAAQSDIVWDTFLPNDLDDFISRSKPGG 69

Query: 64  --MNPTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLW 123
              +P +SSKK+IFFSL ++PLLID+ K+S SLD  SGKKCIMLGARDLSI   DTS  W
Sbjct: 70  LNFDPITSSKKEIFFSLCNSPLLIDNAKKSLSLDKQSGKKCIMLGARDLSIVWDDTSVYW 129

Query: 124 KWVPHQGSRF 127
            W  H  SRF
Sbjct: 130 TWESHPESRF 139

[Close]

BLAST of CSPI01G20070 vs. TrEMBL
Match: A0A0A0LX65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.4e-34
Identity = 79/131 (60.31%), Postives = 93/131 (70.99%), Query Frame = 1


Query: 3   EFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPT 62
           +FSSLPEGV+A ILSLT+P D C  SAVS  FHAAAQSD+ W +F+P+D+ L ISR NP 
Sbjct: 17  DFSSLPEGVVAKILSLTTPPDACVSSAVSKIFHAAAQSDIVWNQFLPTDWELFISRSNPN 76

Query: 63  S-------SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSL 122
                   S KKDIFFSL   P+LIDDG +SFSL+ WSGKKCIM+GARDLSI+  + S  
Sbjct: 77  KLKFDPIFSPKKDIFFSLCYFPVLIDDGNKSFSLEKWSGKKCIMVGARDLSITWGENSDS 136

Query: 123 WKWVPHQGSRF 127
             W  H  SRF
Sbjct: 137 -SWEDHPDSRF 146

[Close]

BLAST of CSPI01G20070 vs. TrEMBL
Match: B9RJ44_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-33
Identity = 72/126 (57.14%), Postives = 89/126 (70.63%), Query Frame = 1


Query: 6   SLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTS-- 65
           SLPEG IA+++S T P D CRLS VS TF  AA SD  WE+F+P DYH +ISR + +   
Sbjct: 14  SLPEGCIADVVSFTGPFDACRLSTVSSTFRDAANSDTVWEKFLPQDYHSIISRSSDSFLL 73

Query: 66  ---SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP 125
              SSKK ++FSL D P+LIDDGK+SF+L+ WSGKKC ML ARDL I  SDT + W+W+ 
Sbjct: 74  DRFSSKKQLYFSLCDNPILIDDGKKSFALEKWSGKKCYMLSARDLKIVWSDTPTYWRWIC 133

Query: 126 HQGSRF 127
              SRF
Sbjct: 134 LPDSRF 139

[Close]

BLAST of CSPI01G20070 vs. TAIR10
Match: AT2G02240.1 (AT2G02240.1 F-box family protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-26
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 4   FSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTS 63
           F  LPE  I+NI+S TSP D C  ++VS TF +A  SD  W++F+P +Y  L+SR +   
Sbjct: 61  FDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR-SRVF 120

Query: 64  SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVPHQG 123
           +SKK+++F+L   P+LI+DGK+SF L+  SGK+CIML +++L I+   +   W+W+    
Sbjct: 121 ASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPE 180

Query: 124 SRF 127
           SRF
Sbjct: 181 SRF 182

[Close]

BLAST of CSPI01G20070 vs. TAIR10
Match: AT2G02360.1 (AT2G02360.1 phloem protein 2-B10)

HSP 1 Score: 114.8 bits (286), Expect = 4.0e-26
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1


Query: 4   FSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTS 63
           F S PE  I+ I+S T+P D C  + VS TF +  +SD+ WE+F+P+DY  LI       
Sbjct: 14  FDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSR-VF 73

Query: 64  SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVPHQG 123
           SSKK+++FSL + P+L DD K+S  L+  SGK+C+ML A +LSI   D    W+W+P   
Sbjct: 74  SSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPE 133

Query: 124 SRF 127
           SRF
Sbjct: 134 SRF 135

[Close]

BLAST of CSPI01G20070 vs. TAIR10
Match: AT5G24560.1 (AT5G24560.1 phloem protein 2-B12)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 2   VEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNP 61
           + F  LPE  IA ++S TSP D CR+SAVS    +AA S+  WERF+PSDY + I   + 
Sbjct: 1   MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDN-SL 60

Query: 62  TSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVPH 121
           +  S K +F    ++PLLI+DG+ SF ++  SGKKC ML AR L I   D+   W WV  
Sbjct: 61  SRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 120

Query: 122 QGSRF 127
             SRF
Sbjct: 121 PDSRF 124

[Close]

BLAST of CSPI01G20070 vs. TAIR10
Match: AT2G02310.1 (AT2G02310.1 phloem protein 2-B6)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 4   FSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPTS 63
           F  LPE  I+NI+S TSP D C  ++VS +F  A Q D  WE+F+PS+Y  LI       
Sbjct: 45  FDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWR-VF 104

Query: 64  SSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWV 120
           SSKKD++F+L   P+L++DGK+SF L+  SGKKC++L A++L I+G +    W+W+
Sbjct: 105 SSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWI 159

[Close]

BLAST of CSPI01G20070 vs. TAIR10
Match: AT2G02340.1 (AT2G02340.1 phloem protein 2-B8)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 1   MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN 60
           + E   LPE  ++ I+S TSP D C L++VS TF +A +SD+ WE+FIP +Y  LIS+  
Sbjct: 33  VAELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSR 92

Query: 61  PTSS-SKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWV 120
                SKK+++F+L D  +LIDDGK+S  ++  + K+CIM+ A +L+I+  ++   W+W+
Sbjct: 93  AFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWI 152

Query: 121 PHQGSRF 127
           P   +RF
Sbjct: 153 PDPQARF 159

[Close]

BLAST of CSPI01G20070 vs. NCBI nr
Match: gi|778660695|ref|XP_011656734.1| (PREDICTED: F-box protein SKIP3-like [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.7e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN 60
           MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN
Sbjct: 1   MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN 60

Query: 61  PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP 120
           PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP
Sbjct: 61  PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP 120

Query: 121 HQGSRF 127
           HQGSRF
Sbjct: 121 HQGSRF 126

[Close]

BLAST of CSPI01G20070 vs. NCBI nr
Match: gi|700210335|gb|KGN65431.1| (hypothetical protein Csa_1G421910 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.2e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN 60
           MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN
Sbjct: 26  MVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMN 85

Query: 61  PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP 120
           PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP
Sbjct: 86  PTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSLWKWVP 145

Query: 121 HQGSR 126
           HQGSR
Sbjct: 146 HQGSR 150

[Close]

BLAST of CSPI01G20070 vs. NCBI nr
Match: gi|659107353|ref|XP_008453631.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39
Identity = 84/131 (64.12%), Postives = 99/131 (75.57%), Query Frame = 1


Query: 3   EFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRMNPT 62
           +FSSLPEGV+A ILS T+P D CR S VS TF AAAQSD+ W+ F+P+D+ +LISR  P+
Sbjct: 12  DFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDSFLPTDWEILISRRKPS 71

Query: 63  -------SSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSL 122
                  SSSKK+IFFSL DTPL+IDDG +SFSLD WSGKKCIMLGAR+LSI  SD  + 
Sbjct: 72  NLNFDPISSSKKEIFFSLCDTPLIIDDGNKSFSLDKWSGKKCIMLGARELSIIWSDMPTY 131

Query: 123 WKWVPHQGSRF 127
           W W PH  SRF
Sbjct: 132 WTWEPHPESRF 142

[Close]

BLAST of CSPI01G20070 vs. NCBI nr
Match: gi|659107349|ref|XP_008453629.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 8.6e-39
Identity = 85/131 (64.89%), Postives = 99/131 (75.57%), Query Frame = 1


Query: 3   EFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISR---- 62
           + SSLPEGVIANILSLT+PLD CR SAVSW FHAAAQSD+ W+RF+P+D   LISR    
Sbjct: 9   DVSSLPEGVIANILSLTTPLDACRSSAVSWVFHAAAQSDIVWDRFLPNDLDDLISRSKPG 68

Query: 63  ---MNPTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSL 122
               +P +SSKK+IFFSL ++PLLID+ K+S SLD  SGKKC+MLGARDLSI   DTS  
Sbjct: 69  GLNFDPITSSKKEIFFSLCNSPLLIDNAKKSLSLDKQSGKKCLMLGARDLSIVWDDTSVY 128

Query: 123 WKWVPHQGSRF 127
           W W  H  SRF
Sbjct: 129 WTWESHPESRF 139

[Close]

BLAST of CSPI01G20070 vs. NCBI nr
Match: gi|659107345|ref|XP_008453627.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 4.3e-38
Identity = 83/131 (63.36%), Postives = 97/131 (74.05%), Query Frame = 1


Query: 3   EFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSDYHLLISRM--- 62
           + SSLPEGV+A ILSLT+P D C LSAVS TFHAAAQSDV W  F+P+D+ LLISR+   
Sbjct: 13  DLSSLPEGVVAKILSLTTPPDACVLSAVSKTFHAAAQSDVVWNEFLPADWELLISRLKPN 72

Query: 63  ----NPTSSSKKDIFFSLSDTPLLIDDGKQSFSLDIWSGKKCIMLGARDLSISGSDTSSL 122
               +P SS KKDIFFSL   P+LIDDG +SFSL+ W+GKKCIMLGARDLSI+  + S  
Sbjct: 73  KLKFDPVSSPKKDIFFSLCYFPVLIDDGNKSFSLEKWTGKKCIMLGARDLSITWGENSDY 132

Query: 123 WKWVPHQGSRF 127
           W W  H  SRF
Sbjct: 133 WTWEDHPDSRF 143

The following BLAST results are available for this feature:

BLAST of CSPI01G20070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKIP3_ARATH	6.4e-26	50.00	F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2	[more]
FB95_ARATH	1.9e-25	44.72	F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1	[more]
P2B10_ARATH	7.0e-25	45.53	F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1	[more]
P2B12_ARATH	2.0e-24	46.40	Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1	[more]
PP2B6_ARATH	2.0e-24	46.55	Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=3 SV=1	[more]

BLAST of CSPI01G20070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZQ3_CUCSA	5.7e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1	[more]
A0A0A0LWS1_CUCSA	5.1e-38	63.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1	[more]
A0A0A0LU29_CUCSA	9.5e-37	64.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1	[more]
A0A0A0LX65_CUCSA	3.4e-34	60.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1	[more]
B9RJ44_RICCO	1.7e-33	57.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1	[more]

BLAST of CSPI01G20070 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02240.1	1.0e-26	44.72	F-box family protein	[more]
AT2G02360.1	4.0e-26	45.53	phloem protein 2-B10	[more]
AT5G24560.1	1.2e-25	46.40	phloem protein 2-B12	[more]
AT2G02310.1	1.2e-25	46.55	phloem protein 2-B6	[more]
AT2G02340.1	1.5e-25	41.73	phloem protein 2-B8	[more]

BLAST of CSPI01G20070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660695\|ref\|XP_011656734.1\|	1.7e-66	100.00	PREDICTED: F-box protein SKIP3-like [Cucumis sativus]	[more]
gi\|700210335\|gb\|KGN65431.1\|	8.2e-66	100.00	hypothetical protein Csa_1G421910 [Cucumis sativus]	[more]
gi\|659107353\|ref\|XP_008453631.1\|	1.0e-39	64.12	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|659107349\|ref\|XP_008453629.1\|	8.6e-39	64.89	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|659107345\|ref\|XP_008453627.1\|	4.3e-38	63.36	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR025886	PP2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G20070.1	CSPI01G20070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 4..48 score: 6.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 1..47 score: 9
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 4..100 score: 3.01
IPR025886	Phloem protein 2-like	PFAM	PF14299	PP2	coord: 95..126 score: 3.
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 4..67 score: 1.
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 1..126 score: 4.6
None	No IPR available	PANTHER	PTHR32278:SF6	F-BOX PROTEIN PP2-B1-RELATED	coord: 1..126 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G20070	Cla018806	Watermelon (97103) v1	cpiwmB087
CSPI01G20070	Csa1G421910	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G20070	MELO3C017484	Melon (DHL92) v3.5.1	cpimeB043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G20070	Cucurbita maxima (Rimu)	cmacpiB060
CSPI01G20070	Cucurbita maxima (Rimu)	cmacpiB099
CSPI01G20070	Cucurbita moschata (Rifu)	cmocpiB052
CSPI01G20070	Cucurbita moschata (Rifu)	cmocpiB091
CSPI01G20070	Cucumber (Chinese Long) v2	cpicuB022
CSPI01G20070	Watermelon (Charleston Gray)	cpiwcgB072
CSPI01G20070	Watermelon (97103) v1	cpiwmB081
CSPI01G20070	Cucurbita pepo (Zucchini)	cpecpiB352
CSPI01G20070	Cucurbita pepo (Zucchini)	cpecpiB641
CSPI01G20070	Bottle gourd (USVL1VR-Ls)	cpilsiB008
CSPI01G20070	Bottle gourd (USVL1VR-Ls)	cpilsiB015
CSPI01G20070	Bottle gourd (USVL1VR-Ls)	cpilsiB065
CSPI01G20070	Melon (DHL92) v3.6.1	cpimedB037
CSPI01G20070	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G20070	Cucumber (Gy14) v2	cgybcpiB049
CSPI01G20070	Silver-seed gourd	carcpiB0625
CSPI01G20070	Silver-seed gourd	carcpiB0822
CSPI01G20070	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G20070	Cucumber (Chinese Long) v3	cpicucB026
CSPI01G20070	Watermelon (97103) v2	cpiwmbB022
CSPI01G20070	Watermelon (97103) v2	cpiwmbB069
CSPI01G20070	Wax gourd	cpiwgoB004
CSPI01G20070	Wax gourd	cpiwgoB101
CSPI01G20070	Wild cucumber (PI 183967)	cpicpiB012
CSPI01G20070	Cucumber (Gy14) v1	cgycpiB094
CSPI01G20070	Cucumber (Gy14) v1	cgycpiB098