Cla018806 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018806
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box family protein (AHRD V1 -- B9IL88_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box
Location	Chr6 : 22321946 .. 22324726 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGACGGAAAGGGGAAGGCAACGGAGGGGGAAGAAATTTCTAGTTTCTCTTCGCTGCCTGAAGGAGTCGTAGCTAAAATCATGTCGCTGACCACTCCACCGGATGCCTGCCGATTGTCGGCGGTTTCTAGGACTTTCGTTGCGGCGGCGCAGTCGGATATCGTCTGGGGCAGATTCCTGCCCACCGATTGGAAGCTTTTGATTTCTCAGCGGAAATCTAGCAACCTCAATTTTGATCCAATTTCAAGTCCTAAGAAAGAGATCTTTTTCTCCCTTTGCGATGACTGCCCTTTGCTAATTGATGACGGCAATAAGGTATGTTTTATTCCCCTAATTTCTCTAAATTCAAACTGACTAGCGGCCGGCCGGAGTTTTATCAGTTGTCGGCTGACGCAAGCCCTACTCCGGCTGTGGACATTTTTTTTCTCTTCGTAATGTTGACTATTCAACCAAATAGTGCATTTCCAGAAAAAAGAAACGTTGACTTTCCAATTCATTATTATAATGTTATTAAGATAATACAATGAATATGTTTTCAAAATTTAGATAATAAAATGTTTTTAGAAAAAAAAAATCCACAAGAAACTAGTATATACAGGGATTAAATCTATAAATCTATTATTTATTTAAAATAAATGAACTAAAATGATATTGAGATTAAAATTATTAAGACTTTTTTTTCTCTTGTTTTTGTTAAAACTTATTAGTAATTTATTGTGTATTATTATAAGGAAAATTATTATAAATAGAAAAAATATCAAATTATTTACAAATATAACAAAATTTTACTTTCTATCTCTTATAGACCGCGATAAATTTAGATAGACAATGATAGATGTCTATTTGAATCTATCGCGATCTATCATAGATTAAAAGTAAAATTTTGCTATATTTTATAATTATTTTCAAAAAATTTTCTATTTTTTAAAATGTCCCTTGCTATAATTTAACTACTCAAACTATATCAAATATCTCTTTATTAATTTTAAGATTAGGTTTCAATCATGTCAATAGATTTTGAAGAGTTTATTTTTAACTCATATCAATTCTTGTTTTTTCAAAATAACACACTAATTTTAAATTATCCATAAAAAAATGTTTTTTTTGATAAAATGGATAGTTGCAAATATAGTAATCAAGTCTAAAGTATTATTAGATGTAGCACAACGCAAATGAATTTGTAGATATTGCCAAATTTAGATTCTATTTTTGAAATCTATTAGTGATAGACCATATAAATAGTAGGGAAGACCATATCACTAAAAGAAGTCTATTTGTGATAGAATCTATCATTGCTAGATTTTTCTATATTTGCAATTTTTTAAAAACATTGCTATACACTTAATTAGGGGTGAGCATGATAGACCGAAAAACTGAGGCAACCGACTAAACTGAAGGCGGTCGGTTGGAGAAGAGGAGGGACTCACGATGTGATTTGGAAAATTTTCAAACCGACCGTAGTTGGTTCGGTGGTGGTTTGGTCGAAAACCCGACTTCGGTCAATCATTGCAAACCCCTACACTTAATTATTATCCCTAAAAATACTATCCAACGCAATTATCCTAAAAAATAGAAATCGGCATGACAATCTAAGCATACGTAAAATTATTTACAATAATATAGAGGATTTTTTTAAAATCAAATATCAAGAGGATTAAGATATTTATTATCCTTTATTTCATGCCAATGTGGCTAAAACCGTTTACATAACTACATGCATAAATTGTCATATCAATTTATGTGAACAACGTTGTAAATGATTTCATCCAAATGTCCAATCAATTTCCATCTTATTTTAACGAAAAATAAATAAATAAGAACTTTCTGAAACTATTTTTTTTAGAACAATTTGAAAGTTCTATGGTAAGAATGAAACATTTCAATAGCAGAGGAATAATTGAAACATATTCCAAATTTAATATGTAATGTAACTTTAAAACTTAGCTTTTTATCTAAATATAGATCAACTAATTAAAATATATATCTTTCTTATCTTTACCTAACTTTCCGTGAACTAAAAGGAAAAAACCTTTAACTATTATGTATAATTGCACAGAAAAGGAAAATGATGGGTCGAGGGAATTGAACTTATAAAGATTCATAAAAGAATTGATCTTATTCAAATGATAATCTTTTTGGAATTTTGATCTTATTCAAATGATATTTTTTTTGGGATTTCTAATATTATTAATAGAAGGTGGCTGATAACTTGTAGAAGTACAAGTTATTATAGTCACTATTTGAATTAATTAGAGTAACTTTAGAGCTAAACGCATGATTTTGGTAGTTGAATTATGTAAAATGTATTACCATGCGTTGACACTATTTACAAAAGAAAATACCTATTATGAGCTTTTCTGTTCTTAACATATGATTAAGAAGAAAAGAAGCACAAATAACCCAAGTACTAGAGACAAAGCTGCTGCGAGAACAAGTGGAAACCCATGCGTCGAGACTATGCGTTGAGACCGTGCGCTTGAGACCATGTGTTGAGAAAGAGTAGATACAGACGCTTGGACAAAAGCTGTCATGTCACGTTATCAGATCATGGCAGAACAAATGGACCAACGATGTGAAAAGTCTGCGCAGCTGGGCATGAAATTTAATGTAAAGGTGTCAGGTCATCATAAGTTCAACTTTTCGACGCCTATAAATAGCCCAAAGCTTCTCCATTCAAGGGAGAGAGAAACGAGTTCAAGAGATGAAAGCTCCGCACAAATTCTCCCTCACCATAACCAGCCTCCATTTCAAGCTCTTCTGAGAGAAGGATTCTGA

mRNA sequence

ATGGAAGAAGACGGAAAGGGGAAGGCAACGGAGGGGGAAGAAATTTCTAGTTTCTCTTCGCTGCCTGAAGGAGTCGTAGCTAAAATCATGTCGCTGACCACTCCACCGGATGCCTGCCGATTGTCGGCGGTTTCTAGGACTTTCGTTGCGGCGGCGCAGTCGGATATCGTCTGGGGCAGATTCCTGCCCACCGATTGGAAGCTTTTGATTTCTCAGCGGAAATCTAGCAACCTCAATTTTGATCCAATTTCAAGTCCTAAGAAAGAGATCTTTTTCTCCCTTTGCGATGACTGCCCTTTGCTAATTGATGACGGCAATAAGATCATGGCAGAACAAATGGACCAACGATGTGAAAAGTCTGCGCAGCTGGGCATGAAATTTAATGTAAAGGTGTCAGGTCATCATAAGTTCAACTTTTCGACGCCTATAAATAGCCCAAAGCTTCTCCATTCAAGGGAGAGAGAAACGAGTTCAAGAGATGAAAGCTCCGCACAAATTCTCCCTCACCATAACCAGCCTCCATTTCAAGCTCTTCTGAGAGAAGGATTCTGA

Coding sequence (CDS)

ATGGAAGAAGACGGAAAGGGGAAGGCAACGGAGGGGGAAGAAATTTCTAGTTTCTCTTCGCTGCCTGAAGGAGTCGTAGCTAAAATCATGTCGCTGACCACTCCACCGGATGCCTGCCGATTGTCGGCGGTTTCTAGGACTTTCGTTGCGGCGGCGCAGTCGGATATCGTCTGGGGCAGATTCCTGCCCACCGATTGGAAGCTTTTGATTTCTCAGCGGAAATCTAGCAACCTCAATTTTGATCCAATTTCAAGTCCTAAGAAAGAGATCTTTTTCTCCCTTTGCGATGACTGCCCTTTGCTAATTGATGACGGCAATAAGATCATGGCAGAACAAATGGACCAACGATGTGAAAAGTCTGCGCAGCTGGGCATGAAATTTAATGTAAAGGTGTCAGGTCATCATAAGTTCAACTTTTCGACGCCTATAAATAGCCCAAAGCTTCTCCATTCAAGGGAGAGAGAAACGAGTTCAAGAGATGAAAGCTCCGCACAAATTCTCCCTCACCATAACCAGCCTCCATTTCAAGCTCTTCTGAGAGAAGGATTCTGA

Protein sequence

MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKIMAEQMDQRCEKSAQLGMKFNVKVSGHHKFNFSTPINSPKLLHSRERETSSRDESSAQILPHHNQPPFQALLREGF

Homology

[Close]

BLAST of Cla018806 vs. Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-16
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 16  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKS 75
           S+  SLPEG ++ I+S T+P DAC  +AVS+ F +A +SDIVW +FLPTD++ LI+  + 
Sbjct: 22  STLDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSR- 81

Query: 76  SNLNFDPISSPKKEIFFSLCDDCPLLIDDG 106
                  + S KKE++FSLC+D PLLI+DG
Sbjct: 82  -------VFSSKKELYFSLCND-PLLIEDG 102

[Close]

BLAST of Cla018806 vs. Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-14
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 1


Query: 15  ISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRK 74
           ++    LPE  V+ I+S T+P DAC L++VS+TF +A +SDIVW +F+P +++ LISQ +
Sbjct: 33  VAELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSR 92

Query: 75  SSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           +    F  +S  KKE++F+LCD   +LIDDG K
Sbjct: 93  A----FKFLS--KKELYFALCDK-SVLIDDGKK 118

[Close]

BLAST of Cla018806 vs. Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-14
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 14  EISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQR 73
           E S F S PE  ++ I+S T P DAC  + VS+TF +  +SDI+W +FLP D++ LI   
Sbjct: 10  ESSPFDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPS 69

Query: 74  KSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           +        + S KKE++FSLC+D P+L DD  K
Sbjct: 70  R--------VFSSKKELYFSLCND-PVLFDDDKK 94

[Close]

BLAST of Cla018806 vs. Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-14
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 16  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKS 75
           S F +LPE  ++ I+S T+P DAC  ++VS+TF +A  SD VW +FLP+D+  L+   + 
Sbjct: 45  SLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR- 104

Query: 76  SNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
                  + S KKE++F++CD+ P+L++DG K
Sbjct: 105 -------VFSSKKELYFAICDN-PVLVEDGGK 127

[Close]

BLAST of Cla018806 vs. Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 16  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKS 75
           S F  LPE  ++ I+S T+P DAC  ++VS+TF +A  SD VW +FLP +++ L+S+ + 
Sbjct: 59  SPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSR- 118

Query: 76  SNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
                  + + KKE++F+LC + P+LI+DG K
Sbjct: 119 -------VFASKKELYFALCHN-PVLIEDGKK 141

[Close]

BLAST of Cla018806 vs. TrEMBL
Match: A0A0A0LWS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-34
Identity = 81/107 (75.70%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           MEE+ KG     E IS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  
Sbjct: 1   MEEEEKG-----EGISDFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDS 60

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           FLPTDW++LIS+RK SNLNFDPISS KK IFFSLC D PL+IDDGNK
Sbjct: 61  FLPTDWEILISRRKPSNLNFDPISSSKKGIFFSLC-DTPLIIDDGNK 101

[Close]

BLAST of Cla018806 vs. TrEMBL
Match: A0A0A0LX65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.3e-34
Identity = 77/107 (71.96%), Postives = 88/107 (82.24%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           ME + KGKA EGE++S FSSLPEGVVAKI+SLTTPPDAC  SAVS+ F AAAQSDIVW +
Sbjct: 1   MEGEIKGKAMEGEQLSDFSSLPEGVVAKILSLTTPPDACVSSAVSKIFHAAAQSDIVWNQ 60

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           FLPTDW+L IS+   + L FDPI SPKK+IFFSLC   P+LIDDGNK
Sbjct: 61  FLPTDWELFISRSNPNKLKFDPIFSPKKDIFFSLC-YFPVLIDDGNK 106

[Close]

BLAST of Cla018806 vs. TrEMBL
Match: A0A0A0LUI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421930 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-25
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           ME DG     E +EI   S LPEGV+A ++S TTP DAC  +AVSR F AAAQSD VW R
Sbjct: 12  MESDG-----EDQEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDR 71

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKIMA--EQMDQRC 118
           FLP DW +LIS RKS    FDP+SS KK+IFFSLC++ P+LIDD NK ++   Q  ++C
Sbjct: 72  FLPPDWDVLISYRKS----FDPLSSSKKDIFFSLCNN-PVLIDDRNKSLSLDRQSGKKC 120

[Close]

BLAST of Cla018806 vs. TrEMBL
Match: A0A0A0LU29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 11  EGEE-ISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLL 70
           EG+E  + FSSLPEGV+A I+SLTTP D CR SAVSR F AAAQSDIVW  FLP D    
Sbjct: 2   EGKEGRTHFSSLPEGVIANILSLTTPLDVCRSSAVSRAFHAAAQSDIVWDTFLPNDLDDF 61

Query: 71  ISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKIMA--EQMDQRC 118
           IS+ K   LNFDPI+S KKEIFFSLC+  PLLID+  K ++  +Q  ++C
Sbjct: 62  ISRSKPGGLNFDPITSSKKEIFFSLCNS-PLLIDNAKKSLSLDKQSGKKC 110

[Close]

BLAST of Cla018806 vs. TrEMBL
Match: A0A0A0LZQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-22
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 6   KGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTD 65
           K   +EG+E+  FSSLPEGV+A I+SLT+P D CRLSAVS TF AAAQSD+ W RF+P+D
Sbjct: 17  KRSESEGKEMVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWERFIPSD 76

Query: 66  WKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           + LLIS+        +P SS KK+IFFSL  D PLLIDDG +
Sbjct: 77  YHLLISR-------MNPTSSSKKDIFFSL-SDTPLLIDDGKQ 110

[Close]

BLAST of Cla018806 vs. NCBI nr
Match: gi|659107353|ref|XP_008453631.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 9.8e-36
Identity = 83/107 (77.57%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           MEE+ KG     EEIS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  
Sbjct: 1   MEEEEKG-----EEISDFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDS 60

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           FLPTDW++LIS+RK SNLNFDPISS KKEIFFSLC D PL+IDDGNK
Sbjct: 61  FLPTDWEILISRRKPSNLNFDPISSSKKEIFFSLC-DTPLIIDDGNK 101

[Close]

BLAST of Cla018806 vs. NCBI nr
Match: gi|449457133|ref|XP_004146303.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 4.1e-34
Identity = 81/107 (75.70%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           MEE+ KG     E IS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  
Sbjct: 1   MEEEEKG-----EGISDFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDS 60

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           FLPTDW++LIS+RK SNLNFDPISS KK IFFSLC D PL+IDDGNK
Sbjct: 61  FLPTDWEILISRRKPSNLNFDPISSSKKGIFFSLC-DTPLIIDDGNK 101

[Close]

BLAST of Cla018806 vs. NCBI nr
Match: gi|778660693|ref|XP_004146356.2| (PREDICTED: F-box protein PP2-B10 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 77/107 (71.96%), Postives = 88/107 (82.24%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           ME + KGKA EGE++S FSSLPEGVVAKI+SLTTPPDAC  SAVS+ F AAAQSDIVW +
Sbjct: 1   MEGEIKGKAMEGEQLSDFSSLPEGVVAKILSLTTPPDACVSSAVSKIFHAAAQSDIVWNQ 60

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           FLPTDW+L IS+   + L FDPI SPKK+IFFSLC   P+LIDDGNK
Sbjct: 61  FLPTDWELFISRSNPNKLKFDPIFSPKKDIFFSLC-YFPVLIDDGNK 106

[Close]

BLAST of Cla018806 vs. NCBI nr
Match: gi|659107345|ref|XP_008453627.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 6.6e-32
Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           ME + KGKAT     S  SSLPEGVVAKI+SLTTPPDAC LSAVS+TF AAAQSD+VW  
Sbjct: 1   MEGEEKGKAT----FSDLSSLPEGVVAKILSLTTPPDACVLSAVSKTFHAAAQSDVVWNE 60

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK 108
           FLP DW+LLIS+ K + L FDP+SSPKK+IFFSLC   P+LIDDGNK
Sbjct: 61  FLPADWELLISRLKPNKLKFDPVSSPKKDIFFSLC-YFPVLIDDGNK 102

[Close]

BLAST of Cla018806 vs. NCBI nr
Match: gi|778660698|ref|XP_011656739.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 1   MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGR 60
           ME DG     E +EI   S LPEGV+A ++S TTP DAC  +AVSR F AAAQSD VW R
Sbjct: 12  MESDG-----EDQEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDR 71

Query: 61  FLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKIMA--EQMDQRC 118
           FLP DW +LIS RKS    FDP+SS KK+IFFSLC++ P+LIDD NK ++   Q  ++C
Sbjct: 72  FLPPDWDVLISYRKS----FDPLSSSKKDIFFSLCNN-PVLIDDRNKSLSLDRQSGKKC 120

The following BLAST results are available for this feature:

BLAST of Cla018806 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKIP3_ARATH	1.0e-16	50.00	F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2	[more]
PP2B8_ARATH	2.1e-14	46.24	Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=3 SV=1	[more]
P2B10_ARATH	4.7e-14	43.62	F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1	[more]
PP2B2_ARATH	4.7e-14	41.30	Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2	[more]
FB95_ARATH	2.3e-13	41.30	F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1	[more]

BLAST of Cla018806 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWS1_CUCSA	2.9e-34	75.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1	[more]
A0A0A0LX65_CUCSA	8.3e-34	71.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1	[more]
A0A0A0LUI2_CUCSA	2.4e-25	57.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421930 PE=4 SV=1	[more]
A0A0A0LU29_CUCSA	2.7e-24	60.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1	[more]
A0A0A0LZQ3_CUCSA	5.6e-22	59.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1	[more]

BLAST of Cla018806 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107353\|ref\|XP_008453631.1\|	9.8e-36	77.57	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|449457133\|ref\|XP_004146303.1\|	4.1e-34	75.70	PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]	[more]
gi\|778660693\|ref\|XP_004146356.2\|	1.2e-33	71.96	PREDICTED: F-box protein PP2-B10 [Cucumis sativus]	[more]
gi\|659107345\|ref\|XP_008453627.1\|	6.6e-32	71.03	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|778660698\|ref\|XP_011656739.1\|	3.5e-25	57.14	PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12309	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018806	Cla018806.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU12309	WMU12309	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 15..61 score: 9
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 7..91 score: 4.19
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 13..85 score: 4.
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 9..107 score: 2.4
None	No IPR available	PANTHER	PTHR32278:SF6	F-BOX PROTEIN PP2-B1-RELATED	coord: 9..107 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018806	Cla97C06G122520	Watermelon (97103) v2	wmwmbB406
Cla018806	CSPI01G20070	Wild cucumber (PI 183967)	cpiwmB087
Cla018806	Bhi02G000601	Wax gourd	wgowmB684

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018806	Wax gourd	wgowmB153
Cla018806	Watermelon (97103) v1	wmwmB164
Cla018806	Watermelon (97103) v1	wmwmB166
Cla018806	Cucumber (Gy14) v1	cgywmB107
Cla018806	Cucumber (Gy14) v1	cgywmB111
Cla018806	Cucurbita maxima (Rimu)	cmawmB071
Cla018806	Cucurbita maxima (Rimu)	cmawmB143
Cla018806	Cucurbita moschata (Rifu)	cmowmB063
Cla018806	Cucurbita moschata (Rifu)	cmowmB128
Cla018806	Melon (DHL92) v3.5.1	mewmB289
Cla018806	Melon (DHL92) v3.5.1	mewmB435
Cla018806	Watermelon (Charleston Gray)	wcgwmB344
Cla018806	Cucumber (Chinese Long) v2	cuwmB079
Cla018806	Cucumber (Chinese Long) v2	cuwmB176
Cla018806	Cucurbita pepo (Zucchini)	cpewmB372
Cla018806	Cucurbita pepo (Zucchini)	cpewmB679
Cla018806	Bottle gourd (USVL1VR-Ls)	lsiwmB121
Cla018806	Bottle gourd (USVL1VR-Ls)	lsiwmB124
Cla018806	Bottle gourd (USVL1VR-Ls)	lsiwmB416
Cla018806	Cucumber (Gy14) v2	cgybwmB080
Cla018806	Cucumber (Gy14) v2	cgybwmB160
Cla018806	Cucumber (Gy14) v2	cgybwmB167
Cla018806	Melon (DHL92) v3.6.1	medwmB283
Cla018806	Silver-seed gourd	carwmB0594
Cla018806	Silver-seed gourd	carwmB0789
Cla018806	Cucumber (Chinese Long) v3	cucwmB092
Cla018806	Cucumber (Chinese Long) v3	cucwmB188
Cla018806	Watermelon (97103) v2	wmwmbB391
Cla018806	Watermelon (97103) v2	wmwmbB392