CSPI01G20070.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGAGTTCTCTTCGCTACCGGAGGGAGTAATAGCCAACATCTTGTCACTGACGTCTCCATTGGATAACTGCCGGTTATCGGCGGTTTCCTGGACTTTTCATGCGGCGGCCCAGTCTGATGTTGCCTGGGAGAGGTTTATTCCTTCAGATTACCACCTTTTAATCTCTCGGATGAATCCTACCTCCAGTTCCAAGAAGGATATTTTCTTCTCCCTTTCCGATACTCCGCTGCTCATTGATGACGGCAAACAGGTAACCTCCCCATTTCCTCAATTTCTCTAAACTAAAATCGGAGTTTTATGACTTCTCGGCCGACTAAAGGCCTTTTAAGTAGAGGGTTTATGTATACCCTACCCTTTCTAAACCCTAAGTTCAAACTTGTAATAACTATAAACAAATAGAAATTAGGTTAGTCATTGGGAGGTCGAAGGCATTCCGACGCACACATTGTGCATATTATTTGATAGAATACACACTTGTACCAGTCTTATTAACAAATCACCAGAATGCCATTGGTTTATATGTACATTTTTGTCACTTGTTGAATCAGCTCTGAAGTTGTCCTGTATTCTCTCTTTTGTATTATATTCTTCAATAATTCGTATGTGGCAGAGCTTTTCATTGGACATATGGAGTGGAAAAAAATGCATAATGCTCGGAGCAAGGGACCTGTCGATTTCTGGGAGTGATACCTCTTCCCTTTGGAAATGGGTACCTCATCAAGGGTCAAGGTTTTAA ATGGTTGAGTTCTCTTCGCTACCGGAGGGAGTAATAGCCAACATCTTGTCACTGACGTCTCCATTGGATAACTGCCGGTTATCGGCGGTTTCCTGGACTTTTCATGCGGCGGCCCAGTCTGATGTTGCCTGGGAGAGGTTTATTCCTTCAGATTACCACCTTTTAATCTCTCGGATGAATCCTACCTCCAGTTCCAAGAAGGATATTTTCTTCTCCCTTTCCGATACTCCGCTGCTCATTGATGACGGCAAACAGAGCTTTTCATTGGACATATGGAGTGGAAAAAAATGCATAATGCTCGGAGCAAGGGACCTGTCGATTTCTGGGAGTGATACCTCTTCCCTTTGGAAATGGGTACCTCATCAAGGGTCAAGGTTTTAA ATGGTTGAGTTCTCTTCGCTACCGGAGGGAGTAATAGCCAACATCTTGTCACTGACGTCTCCATTGGATAACTGCCGGTTATCGGCGGTTTCCTGGACTTTTCATGCGGCGGCCCAGTCTGATGTTGCCTGGGAGAGGTTTATTCCTTCAGATTACCACCTTTTAATCTCTCGGATGAATCCTACCTCCAGTTCCAAGAAGGATATTTTCTTCTCCCTTTCCGATACTCCGCTGCTCATTGATGACGGCAAACAGAGCTTTTCATTGGACATATGGAGTGGAAAAAAATGCATAATGCTCGGAGCAAGGGACCTGTCGATTTCTGGGAGTGATACCTCTTCCCTTTGGAAATGGGTACCTCATCAAGGGTCAAGGTTTTAA
BLAST of CSPI01G20070.1 vs. Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2) HSP 1 Score: 118.2 bits (295), Expect = 6.4e-26 Identity = 61/122 (50.00%), Postives = 85/122 (69.67%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.9e-25 Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 7.0e-25 Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24 Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24 Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TrEMBL
Match: A0A0A0LZQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 5.7e-66 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TrEMBL
Match: A0A0A0LWS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 5.1e-38 Identity = 83/131 (63.36%), Postives = 97/131 (74.05%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TrEMBL
Match: A0A0A0LU29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 9.5e-37 Identity = 84/130 (64.62%), Postives = 96/130 (73.85%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TrEMBL
Match: A0A0A0LX65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 3.4e-34 Identity = 79/131 (60.31%), Postives = 93/131 (70.99%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TrEMBL
Match: B9RJ44_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 1.7e-33 Identity = 72/126 (57.14%), Postives = 89/126 (70.63%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TAIR10
Match: AT2G02240.1 (AT2G02240.1 F-box family protein) HSP 1 Score: 116.7 bits (291), Expect = 1.0e-26 Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TAIR10
Match: AT2G02360.1 (AT2G02360.1 phloem protein 2-B10) HSP 1 Score: 114.8 bits (286), Expect = 4.0e-26 Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TAIR10
Match: AT5G24560.1 (AT5G24560.1 phloem protein 2-B12) HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25 Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TAIR10
Match: AT2G02310.1 (AT2G02310.1 phloem protein 2-B6) HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25 Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. TAIR10
Match: AT2G02340.1 (AT2G02340.1 phloem protein 2-B8) HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25 Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. NCBI nr
Match: gi|778660695|ref|XP_011656734.1| (PREDICTED: F-box protein SKIP3-like [Cucumis sativus]) HSP 1 Score: 260.4 bits (664), Expect = 1.7e-66 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. NCBI nr
Match: gi|700210335|gb|KGN65431.1| (hypothetical protein Csa_1G421910 [Cucumis sativus]) HSP 1 Score: 258.1 bits (658), Expect = 8.2e-66 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. NCBI nr
Match: gi|659107353|ref|XP_008453631.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo]) HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39 Identity = 84/131 (64.12%), Postives = 99/131 (75.57%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. NCBI nr
Match: gi|659107349|ref|XP_008453629.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo]) HSP 1 Score: 168.3 bits (425), Expect = 8.6e-39 Identity = 85/131 (64.89%), Postives = 99/131 (75.57%), Query Frame = 1
BLAST of CSPI01G20070.1 vs. NCBI nr
Match: gi|659107345|ref|XP_008453627.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo]) HSP 1 Score: 166.0 bits (419), Expect = 4.3e-38 Identity = 83/131 (63.36%), Postives = 97/131 (74.05%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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