CSPI01G15440 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15440
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 10994709 .. 10995035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGATCTTTGAAAGAAGAAGAAAAGAGATAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGAATAGAAACACTTTGTTAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAAGTAGAGGAAGGGCAGAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTGAGGTGCAAAAATCAAAGTAAT

mRNA sequence

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGATCTTTGAAAGAAGAAGAAAAGAGATAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGAATAGAAACACTTTGTTAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAAGTAGAGGAAGGGCAGAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTGAGGTGCAAAAATCAAAGTAAT

Coding sequence (CDS)

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGATCTTTGAAAGAAGAAGAAAAGAGATAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGAATAGAAACACTTTGTTAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAAGTAGAGGAAGGGCAGAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTGAGGTGCAAAAATCAAAGTAAT

Homology

[Close]

BLAST of CSPI01G15440 vs. TrEMBL
Match: A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.2e-49
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 1   MEITSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLL 60
           MEITSSPDADFSGLATRTLIRSTKEIL+FERRRKE KSETKVGKDVAEEFEKEK RNTL 
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

[Close]

BLAST of CSPI01G15440 vs. TrEMBL
Match: A0A0A0LAF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 53/95 (55.79%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 4   TSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLLEEK 63
           TSSP  DF+ LATRT  R TK I +  RR K  + E KVG+DVAEEFE ++NRNTL EE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

[Close]

BLAST of CSPI01G15440 vs. TrEMBL
Match: A0A0A0L7Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 4   TSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLLEEK 63
           TSSPDADF+ LATRT +RS K I +  +R K  +  TKV + VAEE EKE+   T+ EEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

[Close]

BLAST of CSPI01G15440 vs. TrEMBL
Match: A0A0A0L6W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-11
Identity = 50/86 (58.14%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 1  MEITSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLL 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTLL
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]

BLAST of CSPI01G15440 vs. TrEMBL
Match: A0A0A0K323_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G129390 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 36 IKSETKVGKDVAEEFEKEKNRNTLLEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPH 95
          ++ ETKV ++  +EFEKE N+NT+LEEK+PN KKE GQVY++ LL+AQVE+ +K ++G  
Sbjct: 1  MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60

Query: 96 HHP 99
          HHP
Sbjct: 61 HHP 63

[Close]

BLAST of CSPI01G15440 vs. NCBI nr
Match: gi|700209907|gb|KGN65003.1| (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 6.0e-49
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 1   MEITSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLL 60
           MEITSSPDADFSGLATRTLIRSTKEIL+FERRRKE KSETKVGKDVAEEFEKEK RNTL 
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

[Close]

BLAST of CSPI01G15440 vs. NCBI nr
Match: gi|700202806|gb|KGN57939.1| (hypothetical protein Csa_3G399460 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-13
Identity = 53/95 (55.79%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 4   TSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLLEEK 63
           TSSP  DF+ LATRT  R TK I +  RR K  + E KVG+DVAEEFE ++NRNTL EE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

[Close]

BLAST of CSPI01G15440 vs. NCBI nr
Match: gi|700202842|gb|KGN57975.1| (hypothetical protein Csa_3G417670 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-12
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 4   TSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLLEEK 63
           TSSPDADF+ LATRT +RS K I +  +R K  +  TKV + VAEE EKE+   T+ EEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

[Close]

BLAST of CSPI01G15440 vs. NCBI nr
Match: gi|700202597|gb|KGN57730.1| (hypothetical protein Csa_3G265260 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 50/86 (58.14%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 1  MEITSSPDADFSGLATRTLIRSTKEILIFERRRKEIKSETKVGKDVAEEFEKEKNRNTLL 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTLL
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]

BLAST of CSPI01G15440 vs. NCBI nr
Match: gi|700188807|gb|KGN44040.1| (hypothetical protein Csa_7G129390 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 36 IKSETKVGKDVAEEFEKEKNRNTLLEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPH 95
          ++ ETKV ++  +EFEKE N+NT+LEEK+PN KKE GQVY++ LL+AQVE+ +K ++G  
Sbjct: 1  MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60

Query: 96 HHP 99
          HHP
Sbjct: 61 HHP 63

The following BLAST results are available for this feature:

BLAST of CSPI01G15440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTC4_CUCSA	4.2e-49	96.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173720 PE=4 SV=1	[more]
A0A0A0LAF6_CUCSA	3.7e-13	55.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G399460 PE=4 SV=1	[more]
A0A0A0L7Q4_CUCSA	4.1e-12	50.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G417670 PE=4 SV=1	[more]
A0A0A0L6W8_CUCSA	7.7e-11	58.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G265260 PE=4 SV=1	[more]
A0A0A0K323_CUCSA	2.9e-10	57.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G129390 PE=4 SV=1	[more]

BLAST of CSPI01G15440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G15440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209907\|gb\|KGN65003.1\|	6.0e-49	96.33	hypothetical protein Csa_1G173720 [Cucumis sativus]	[more]
gi\|700202806\|gb\|KGN57939.1\|	5.3e-13	55.79	hypothetical protein Csa_3G399460 [Cucumis sativus]	[more]
gi\|700202842\|gb\|KGN57975.1\|	5.9e-12	50.53	hypothetical protein Csa_3G417670 [Cucumis sativus]	[more]
gi\|700202597\|gb\|KGN57730.1\|	1.1e-10	58.14	hypothetical protein Csa_3G265260 [Cucumis sativus]	[more]
gi\|700188807\|gb\|KGN44040.1\|	4.2e-10	57.14	hypothetical protein Csa_7G129390 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15440.1	CSPI01G15440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15440	Csa1G173720	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G15440	CsaV3_1G015580	Cucumber (Chinese Long) v3	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15440	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G15440	Watermelon (97103) v2	cpiwmbB005
CSPI01G15440	Watermelon (97103) v2	cpiwmbB008
CSPI01G15440	Watermelon (97103) v2	cpiwmbB009
CSPI01G15440	Wax gourd	cpiwgoB036
CSPI01G15440	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G15440	Wild cucumber (PI 183967)	cpicpiB049
CSPI01G15440	Cucumber (Gy14) v1	cgycpiB017
CSPI01G15440	Cucumber (Gy14) v1	cgycpiB482
CSPI01G15440	Cucurbita maxima (Rimu)	cmacpiB215
CSPI01G15440	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G15440	Cucurbita maxima (Rimu)	cmacpiB222
CSPI01G15440	Cucurbita maxima (Rimu)	cmacpiB399
CSPI01G15440	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G15440	Cucurbita moschata (Rifu)	cmocpiB200
CSPI01G15440	Cucurbita moschata (Rifu)	cmocpiB385
CSPI01G15440	Cucumber (Chinese Long) v2	cpicuB049
CSPI01G15440	Melon (DHL92) v3.5.1	cpimeB031
CSPI01G15440	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G15440	Watermelon (Charleston Gray)	cpiwcgB023
CSPI01G15440	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15440	Watermelon (Charleston Gray)	cpiwcgB030
CSPI01G15440	Watermelon (97103) v1	cpiwmB044
CSPI01G15440	Watermelon (97103) v1	cpiwmB050
CSPI01G15440	Watermelon (97103) v1	cpiwmB063
CSPI01G15440	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15440	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G15440	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G15440	Bottle gourd (USVL1VR-Ls)	cpilsiB027
CSPI01G15440	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15440	Bottle gourd (USVL1VR-Ls)	cpilsiB038
CSPI01G15440	Melon (DHL92) v3.6.1	cpimedB025
CSPI01G15440	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G15440	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G15440	Silver-seed gourd	carcpiB0053
CSPI01G15440	Silver-seed gourd	carcpiB0055
CSPI01G15440	Silver-seed gourd	carcpiB0435