CsaV3_1G015580 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015580
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 11101817 .. 11102146 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

mRNA sequence

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

Coding sequence (CDS)

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

Protein sequence

MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN

Homology

[Close]

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.5e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
           MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

[Close]

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_3G399460 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 8.0e-13
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

[Close]

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN57975.1 (hypothetical protein Csa_3G417670 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

[Close]

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN57730.1 (hypothetical protein Csa_3G265260 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-10
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN44040.1 (hypothetical protein Csa_7G129390 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-08
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63

[Close]

BLAST of CsaV3_1G015580 vs. TrEMBL
Match: tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.7e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
           MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

[Close]

BLAST of CsaV3_1G015580 vs. TrEMBL
Match: tr|A0A0A0LAF6|A0A0A0LAF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.3e-13
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

[Close]

BLAST of CsaV3_1G015580 vs. TrEMBL
Match: tr|A0A0A0L7Q4|A0A0A0L7Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

[Close]

BLAST of CsaV3_1G015580 vs. TrEMBL
Match: tr|A0A0A0L6W8|A0A0A0L6W8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.5e-10
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]

BLAST of CsaV3_1G015580 vs. TrEMBL
Match: tr|A0A0A0K323|A0A0A0K323_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65003.1	2.5e-51	100.00	hypothetical protein Csa_1G173720 [Cucumis sativus]	[more]
KGN57939.1	8.0e-13	56.84	hypothetical protein Csa_3G399460 [Cucumis sativus]	[more]
KGN57975.1	1.4e-12	52.63	hypothetical protein Csa_3G417670 [Cucumis sativus]	[more]
KGN57730.1	8.3e-10	56.98	hypothetical protein Csa_3G265260 [Cucumis sativus]	[more]
KGN44040.1	2.7e-08	56.67	hypothetical protein Csa_7G129390 [Cucumis sativus]	[more]

BLAST of CsaV3_1G015580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTC4\|A0A0A0LTC4_CUCSA	1.7e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1	[more]
tr\|A0A0A0LAF6\|A0A0A0LAF6_CUCSA	5.3e-13	56.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1	[more]
tr\|A0A0A0L7Q4\|A0A0A0L7Q4_CUCSA	9.0e-13	52.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1	[more]
tr\|A0A0A0L6W8\|A0A0A0L6W8_CUCSA	5.5e-10	56.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1	[more]
tr\|A0A0A0K323\|A0A0A0K323_CUCSA	1.8e-08	56.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015580.1	CsaV3_1G015580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015580	CSPI01G15440	Wild cucumber (PI 183967)	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015580	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_1G015580	Silver-seed gourd	carcucB0054
CsaV3_1G015580	Silver-seed gourd	carcucB0056
CsaV3_1G015580	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015580	Cucumber (Gy14) v1	cgycucB496
CsaV3_1G015580	Cucurbita maxima (Rimu)	cmacucB0246
CsaV3_1G015580	Cucurbita maxima (Rimu)	cmacucB0468
CsaV3_1G015580	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015580	Cucurbita maxima (Rimu)	cmacucB1004
CsaV3_1G015580	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G015580	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G015580	Wild cucumber (PI 183967)	cpicucB318
CsaV3_1G015580	Bottle gourd (USVL1VR-Ls)	cuclsiB017
CsaV3_1G015580	Bottle gourd (USVL1VR-Ls)	cuclsiB027
CsaV3_1G015580	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015580	Bottle gourd (USVL1VR-Ls)	cuclsiB044
CsaV3_1G015580	Melon (DHL92) v3.5.1	cucmeB029
CsaV3_1G015580	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015580	Watermelon (Charleston Gray)	cucwcgB021
CsaV3_1G015580	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015580	Watermelon (Charleston Gray)	cucwcgB029
CsaV3_1G015580	Watermelon (97103) v1	cucwmB049
CsaV3_1G015580	Watermelon (97103) v1	cucwmB064
CsaV3_1G015580	Watermelon (97103) v1	cucwmB067
CsaV3_1G015580	Watermelon (97103) v2	cucwmbB007
CsaV3_1G015580	Watermelon (97103) v2	cucwmbB008
CsaV3_1G015580	Wax gourd	cucwgoB039