Csa1G173720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G173720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10808454 .. 10808783 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

mRNA sequence

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

Coding sequence (CDS)

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

Protein sequence

MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN*
Homology
[Close]
BLAST of Csa1G173720 vs. TrEMBL
Match: A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 8.8e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
           MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

[Close]
BLAST of Csa1G173720 vs. TrEMBL
Match: A0A0A0LAF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-16
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

[Close]
BLAST of Csa1G173720 vs. TrEMBL
Match: A0A0A0L7Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-16
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

[Close]
BLAST of Csa1G173720 vs. TrEMBL
Match: A0A0A0L6W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]
BLAST of Csa1G173720 vs. TrEMBL
Match: A0A0A0K323_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G129390 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-11
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63

[Close]
BLAST of Csa1G173720 vs. NCBI nr
Match: gi|700209907|gb|KGN65003.1| (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
           MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

[Close]
BLAST of Csa1G173720 vs. NCBI nr
Match: gi|700202806|gb|KGN57939.1| (hypothetical protein Csa_3G399460 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-16
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

[Close]
BLAST of Csa1G173720 vs. NCBI nr
Match: gi|700202842|gb|KGN57975.1| (hypothetical protein Csa_3G417670 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-16
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

[Close]
BLAST of Csa1G173720 vs. NCBI nr
Match: gi|700202597|gb|KGN57730.1| (hypothetical protein Csa_3G265260 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-12
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]
BLAST of Csa1G173720 vs. NCBI nr
Match: gi|700188807|gb|KGN44040.1| (hypothetical protein Csa_7G129390 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 8.6e-11
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63

The following BLAST results are available for this feature:
BLAST of Csa1G173720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC4_CUCSA8.8e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173720 PE=4 SV=1[more]
A0A0A0LAF6_CUCSA3.6e-1656.84Uncharacterized protein OS=Cucumis sativus GN=Csa_3G399460 PE=4 SV=1[more]
A0A0A0L7Q4_CUCSA6.2e-1652.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G417670 PE=4 SV=1[more]
A0A0A0L6W8_CUCSA4.1e-1256.98Uncharacterized protein OS=Cucumis sativus GN=Csa_3G265260 PE=4 SV=1[more]
A0A0A0K323_CUCSA6.0e-1156.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G129390 PE=4 SV=1[more]
BLAST of Csa1G173720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209907|gb|KGN65003.1|1.3e-54100.00hypothetical protein Csa_1G173720 [Cucumis sativus][more]
gi|700202806|gb|KGN57939.1|5.2e-1656.84hypothetical protein Csa_3G399460 [Cucumis sativus][more]
gi|700202842|gb|KGN57975.1|8.8e-1652.63hypothetical protein Csa_3G417670 [Cucumis sativus][more]
gi|700202597|gb|KGN57730.1|5.9e-1256.98hypothetical protein Csa_3G265260 [Cucumis sativus][more]
gi|700188807|gb|KGN44040.1|8.6e-1156.67hypothetical protein Csa_7G129390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G173720.1Csa1G173720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G173720CSPI01G15440Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G173720Watermelon (97103) v2cuwmbB005
Csa1G173720Watermelon (97103) v2cuwmbB008
Csa1G173720Watermelon (97103) v2cuwmbB009
Csa1G173720Wax gourdcuwgoB036
Csa1G173720Wax gourdcuwgoB047
Csa1G173720Cucumber (Chinese Long) v2cucuB042
Csa1G173720Cucumber (Gy14) v1cgycuB016
Csa1G173720Cucumber (Gy14) v1cgycuB457
Csa1G173720Cucurbita maxima (Rimu)cmacuB212
Csa1G173720Cucurbita maxima (Rimu)cmacuB210
Csa1G173720Cucurbita maxima (Rimu)cmacuB395
Csa1G173720Cucurbita maxima (Rimu)cmacuB399
Csa1G173720Cucurbita moschata (Rifu)cmocuB199
Csa1G173720Cucurbita moschata (Rifu)cmocuB196
Csa1G173720Cucurbita moschata (Rifu)cmocuB382
Csa1G173720Melon (DHL92) v3.5.1cumeB000
Csa1G173720Watermelon (Charleston Gray)cuwcgB019
Csa1G173720Watermelon (Charleston Gray)cuwcgB020
Csa1G173720Watermelon (Charleston Gray)cuwcgB022
Csa1G173720Watermelon (97103) v1cuwmB042
Csa1G173720Watermelon (97103) v1cuwmB048
Csa1G173720Watermelon (97103) v1cuwmB059
Csa1G173720Cucurbita pepo (Zucchini)cpecuB020
Csa1G173720Cucurbita pepo (Zucchini)cpecuB056
Csa1G173720Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G173720Bottle gourd (USVL1VR-Ls)culsiB020
Csa1G173720Bottle gourd (USVL1VR-Ls)culsiB027
Csa1G173720Bottle gourd (USVL1VR-Ls)culsiB037
Csa1G173720Cucumber (Gy14) v2cgybcuB001
Csa1G173720Cucumber (Gy14) v2cgybcuB240
Csa1G173720Melon (DHL92) v3.6.1cumedB024
Csa1G173720Silver-seed gourdcarcuB0049
Csa1G173720Silver-seed gourdcarcuB0051