CSPI01G14800 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G14800
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransposon Ty3-G Gag-Pol polyprotein
LocationChr1 : 10477172 .. 10477701 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGAGGAAGAGGACATGGACGACTAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCAGTAAATTCAAATGTTAAGAGAGTGATAGAAGAGGAGTTATATAATCGAGTGGTGCAAAATTAAAAGATAGTTTATCAAGAAAGCCGAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGCCAAAGAGTTTTCAAGAACAGTAGAACTAGAGCCGGCGAATAAGTGGTTAAGAGCATTGAAGAAGTGTTTTAGGGTACTGCAGTGCCCCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACCGGCAGGTGTTAGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAGGAGTTTAAGGCAGTGTTTAATGAGAAGTATTTCTTAGAGACTTATAAAGAGGGGAGGCAAGATGAACTTTTCCACCTAGAGCAAGGTGAGCGAGGTCACAGAGTATGCGAAGAAGTTTATGGAGTTGGCTAA

mRNA sequence

ATGTTGCGAGGAAGAGGACATGGACGACTAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGCCAAAGAGTTTTCAAGAACAGTAGAACTAGAGCCGGCGAATAAGTGGTTAAGAGCATTGAAGAAGTGTTTTAGGGTACTGCAGTGCCCCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACCGGCAGGTGTTAGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAGGAGTTTAAGGCAGTGTTTAATGAGAAGTATTTCTTAGAGACTTATAAAGAGGGGAGGCAAGATGAACTTTTCCACCTAGAGCAAGGTGAGCGAGGTCACAGAGTATGCGAAGAAGTTTATGGAGTTGGCTAA

Coding sequence (CDS)

ATGTTGCGAGGAAGAGGACATGGACGACTAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGCCAAAGAGTTTTCAAGAACAGTAGAACTAGAGCCGGCGAATAAGTGGTTAAGAGCATTGAAGAAGTGTTTTAGGGTACTGCAGTGCCCCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACCGGCAGGTGTTAGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAGGAGTTTAAGGCAGTGTTTAATGAGAAGTATTTCTTAGAGACTTATAAAGAGGGGAGGCAAGATGAACTTTTCCACCTAGAGCAAGGTGAGCGAGGTCACAGAGTATGCGAAGAAGTTTATGGAGTTGGCTAA
Homology
[Close]
BLAST of CSPI01G14800 vs. TrEMBL
Match: A0A0A0LVF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 1 

Query: 11  GSKPSTTTEPTMDSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQ 70
           G+  +    P         KKKYGIEQVKAFG KEFSRTVELE ANKWLRAL+KCFRVLQ
Sbjct: 35  GASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQ 94

Query: 71  CPEERKIDLAAFLLHRKAED 91
           C EERKIDLAAFLLHRKAED
Sbjct: 95  CLEERKIDLAAFLLHRKAED 114

[Close]
BLAST of CSPI01G14800 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.4e-16
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1 

Query: 26  AQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLH 85
           AQ  KK +GIE+VKA GA EF+     E A KW+R L+KCFRV+QCP+ER+++LA FLL 
Sbjct: 37  AQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLL 96

Query: 86  RKAEDRQVLEESRRGEVN 104
            +AED  +LEE+RRG V+
Sbjct: 97  ERAEDWWILEENRRGIVS 114

[Close]
BLAST of CSPI01G14800 vs. TrEMBL
Match: A0A151RID1_CAJCA (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_036266 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 1 

Query: 24  SEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFL 83
           +  + P +  G+ + +     +F+     E A++W+  ++K F V+QCPEERK++ A ++
Sbjct: 11  ARTEVPDEYRGLSEFRKGNPPQFTGVDGPEVADQWIEEMEKIFMVMQCPEERKLNYAVYM 70

Query: 84  LHRKA----EDRQVLEESRRGEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           L  +A    +  Q + E+R   VNW+ FK VF EKYF ++ +  ++ E   L+QG
Sbjct: 71  LVGEASFWWKGAQAMMEARGEAVNWDNFKKVFLEKYFPDSARYAKEAEFLRLQQG 125

[Close]
BLAST of CSPI01G14800 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 35  IEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLHRKAEDRQVL 94
           I++VK  GAKEF  + +   A  W+  +++ F VL+CP E ++ LA FLL  K       
Sbjct: 74  IKRVKELGAKEFVGSTDPAEAESWITDVERIFEVLECPAEDRVRLATFLL--KGNAYHWW 133

Query: 95  EESRRG-----EVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           +  +RG      +NWEEF+ VF+E+++  +Y+  ++ E  +L+QG
Sbjct: 134 KAVKRGYENPAAINWEEFQRVFSEQFYPPSYRHAKKSEFLYLKQG 176

[Close]
BLAST of CSPI01G14800 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-09
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 35  IEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLHRKAEDRQVL 94
           I++VK  GAKEF  + +   A  W+  +++ F VL+CP E ++ LA FLL  K       
Sbjct: 74  IKRVKELGAKEFLGSTDPAEAELWITDVERIFEVLECPAEDRVRLATFLL--KGNAYHWW 133

Query: 95  EESRRG-----EVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           +  +RG      +NWEEF+ VF++ ++  +YK+ ++ E  +L+QG
Sbjct: 134 KAVKRGYENPAAINWEEFQRVFSDPFYPPSYKQAKKSEFLYLKQG 176

[Close]
BLAST of CSPI01G14800 vs. NCBI nr
Match: gi|700209843|gb|KGN64939.1| (hypothetical protein Csa_1G165220 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 1 

Query: 11  GSKPSTTTEPTMDSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQ 70
           G+  +    P         KKKYGIEQVKAFG KEFSRTVELE ANKWLRAL+KCFRVLQ
Sbjct: 35  GASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQ 94

Query: 71  CPEERKIDLAAFLLHRKAED 91
           C EERKIDLAAFLLHRKAED
Sbjct: 95  CLEERKIDLAAFLLHRKAED 114

[Close]
BLAST of CSPI01G14800 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-16
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1 

Query: 26  AQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLH 85
           AQ  KK +GIE+VKA GA EF+     E A KW+R L+KCFRV+QCP+ER+++LA FLL 
Sbjct: 37  AQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLL 96

Query: 86  RKAEDRQVLEESRRGEVN 104
            +AED  +LEE+RRG V+
Sbjct: 97  ERAEDWWILEENRRGIVS 114

[Close]
BLAST of CSPI01G14800 vs. NCBI nr
Match: gi|659113911|ref|XP_008456815.1| (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.9e-15
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1 

Query: 33  YGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLHRKAED-- 92
           YGIE++K  GA  F  + +L  A+ WL  L+KCF V+ CP+ERK+ LA FLL ++AE   
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 93  RQVLEESRRGE-VNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           + ++        ++W+ F+ +F EKY+  TY E ++DE   L+QG
Sbjct: 62  KSIIARCNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQG 106

[Close]
BLAST of CSPI01G14800 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 7.8e-15
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 1 

Query: 30  KKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLHRKAE 89
           +K +GIE++KA GA  F+RT +      W+  L+KCF+V++C ++RK++LA FLL + A+
Sbjct: 66  EKTFGIERLKALGATTFARTTDPTDGEGWMNVLEKCFKVMRCLDDRKVELATFLLKKGAD 125

Query: 90  DRQVLEESR---RGEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
                 ESR     E++W EFK  F EKY+  +YK+ ++ E F L  G
Sbjct: 126 YWWRTFESRYHDTNEISWNEFKKAFYEKYYPRSYKDAKRSEFFRLVLG 173

[Close]
BLAST of CSPI01G14800 vs. NCBI nr
Match: gi|659095113|ref|XP_008448403.1| (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1 

Query: 29  PKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLHRKA 88
           P+K YGIE++K  GA  F  + +   A  WL  L+KCF V+ CP++RK+ L  FLL ++A
Sbjct: 60  PEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEA 119

Query: 89  EDRQVLEESRRGE---VNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           E       +RR +   ++W+ F+ +F EKY+  TY E ++DE   L+QG
Sbjct: 120 EGWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQG 168

The following BLAST results are available for this feature:
BLAST of CSPI01G14800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G14800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVF8_CUCSA1.2e-2273.75Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1[more]
A0A0A0LI31_CUCSA6.4e-1657.69Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
A0A151RID1_CAJCA1.5e-0932.17Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_036266 PE=4 SV=1[more]
M5VK25_PRUPE2.0e-0935.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
M5XSR7_PRUPE3.4e-0935.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1[more]
BLAST of CSPI01G14800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G14800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209843|gb|KGN64939.1|1.7e-2273.75hypothetical protein Csa_1G165220 [Cucumis sativus][more]
gi|700206416|gb|KGN61535.1|9.2e-1657.69hypothetical protein Csa_2G163160 [Cucumis sativus][more]
gi|659113911|ref|XP_008456815.1|5.9e-1540.95PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|7.8e-1540.74PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659095113|ref|XP_008448403.1|2.3e-1440.37PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G14800.1CSPI01G14800.1mRNA