CsaV3_1G014910 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014910
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10555438 .. 10556019 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAGTAAAGGTTTAAGTTGCGTTTTAGATAGTTTGATACTAGTTTGGTATTAGAGCATATCTAAAAGTCTTGGAAGTTAAGATGGTTTTAGCAAAATCTGAGAAGTTGAGTTAGTTCACTAATTGTTATACTAATATGCATTGTTGTTCTCTGTCAGAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCAGTAAATTCGAATGTTAAGAGAGTGATAGAAGAGGAGTTATATAATCGAGTGGTGCAAAATTAAAAGATAGTTTATCAAGAAAGCCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

mRNA sequence

ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

Coding sequence (CDS)

ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

Protein sequence

MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED
Homology
[Close]
BLAST of CsaV3_1G014910 vs. NCBI nr
Match: KGN64939.1 (hypothetical protein Csa_1G165220 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60
           MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE
Sbjct: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60

Query: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED
Sbjct: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]
BLAST of CsaV3_1G014910 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79

Query: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 101

[Close]
BLAST of CsaV3_1G014910 vs. NCBI nr
Match: KGN46719.1 (hypothetical protein Csa_6G127310 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76

[Close]
BLAST of CsaV3_1G014910 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 0 

Query: 27  EEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRAL 86
           + E   ++ A  AQ++S     RPS   K YGIEQ+K  G   F  + +   A  WL  L
Sbjct: 34  QNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDPADAEVWLNML 93

Query: 87  EKCFRVLQCLEERKIDLAAFLLHRKAE 114
           EKCF V+ C +E+K+ LA FLL ++AE
Sbjct: 94  EKCFDVMSCPQEQKVRLATFLLQKEAE 120

[Close]
BLAST of CsaV3_1G014910 vs. NCBI nr
Match: XP_008456815.1 (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 2.6e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 57  YGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 114
           YGIE++K  G   F  + +L  A+ WL  LEKCF V+ C +ERK+ LA FLL ++AE
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAE 58

[Close]
BLAST of CsaV3_1G014910 vs. TrEMBL
Match: tr|A0A0A0LVF8|A0A0A0LVF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 8.1e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60
           MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE
Sbjct: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60

Query: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED
Sbjct: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]
BLAST of CsaV3_1G014910 vs. TrEMBL
Match: tr|A0A0A0LI31|A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79

Query: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 101

[Close]
BLAST of CsaV3_1G014910 vs. TrEMBL
Match: tr|A0A0A0KCZ4|A0A0A0KCZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76

[Close]
BLAST of CsaV3_1G014910 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 0 

Query: 27  EEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRAL 86
           + E   ++ A  AQ++S     RPS   K YGIEQ+K  G   F  + +   A  WL  L
Sbjct: 34  QNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDPADAEVWLNML 93

Query: 87  EKCFRVLQCLEERKIDLAAFLLHRKAE 114
           EKCF V+ C +E+K+ LA FLL ++AE
Sbjct: 94  EKCFDVMSCPQEQKVRLATFLLQKEAE 120

[Close]
BLAST of CsaV3_1G014910 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 57  YGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 114
           YGIE++K  G   F  + +L  A+ WL  LEKCF V+ C +ERK+ LA FLL ++AE
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAE 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014910 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64939.11.2e-56100.00hypothetical protein Csa_1G165220 [Cucumis sativus][more]
KGN61535.15.1e-1047.31hypothetical protein Csa_2G163160 [Cucumis sativus][more]
KGN46719.12.8e-0850.00hypothetical protein Csa_6G127310 [Cucumis sativus][more]
XP_016899851.12.4e-0741.38PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
XP_008456815.12.6e-0649.12PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
BLAST of CsaV3_1G014910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVF8|A0A0A0LVF8_CUCSA8.1e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1[more]
tr|A0A0A0LI31|A0A0A0LI31_CUCSA3.3e-1047.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1[more]
tr|A0A0A0KCZ4|A0A0A0KCZ4_CUCSA1.8e-0850.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1[more]
tr|A0A1S4DV40|A0A1S4DV40_CUCME1.6e-0741.38uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... [more]
tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME1.7e-0649.12uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014910.1CsaV3_1G014910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..53

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G014910CSPI01G14800Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014910Cucumber (Chinese Long) v3cuccucB046
CsaV3_1G014910Silver-seed gourdcarcucB0000
CsaV3_1G014910Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014910Cucumber (Gy14) v1cgycucB496
CsaV3_1G014910Cucurbita maxima (Rimu)cmacucB0473
CsaV3_1G014910Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G014910Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G014910Cucurbita maxima (Rimu)cmacucB0962
CsaV3_1G014910Cucurbita moschata (Rifu)cmocucB0460
CsaV3_1G014910Cucurbita moschata (Rifu)cmocucB0951
CsaV3_1G014910Cucurbita pepo (Zucchini)cpecucB0024
CsaV3_1G014910Cucurbita pepo (Zucchini)cpecucB1044
CsaV3_1G014910Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G014910Bottle gourd (USVL1VR-Ls)cuclsiB021
CsaV3_1G014910Bottle gourd (USVL1VR-Ls)cuclsiB050
CsaV3_1G014910Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014910Melon (DHL92) v3.5.1cucmeB072
CsaV3_1G014910Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014910Watermelon (Charleston Gray)cucwcgB019
CsaV3_1G014910Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G014910Watermelon (97103) v1cucwmB009
CsaV3_1G014910Watermelon (97103) v1cucwmB049
CsaV3_1G014910Watermelon (97103) v1cucwmB063
CsaV3_1G014910Watermelon (97103) v1cucwmB074
CsaV3_1G014910Watermelon (97103) v2cucwmbB006
CsaV3_1G014910Watermelon (97103) v2cucwmbB008
CsaV3_1G014910Watermelon (97103) v2cucwmbB025
CsaV3_1G014910Wax gourdcucwgoB051