Csa1G165220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G165220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10308381 .. 10308962 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAGTAAAGGTTTAAGTTGCGTTTTAGATAGTTTGATACTAGTTTGGTATTAGAGCATATCTAAAAGTCTTGGAAGTTAAGATGGTTTTAGCAAAATCTGAGAAGTTGAGTTAGTTCACTAATTGTTATACTAATATGCATTGTTGTTCTCTGTCAGAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCAGTAAATTCGAATGTTAAGAGAGTGATAGAAGAGGAGTTATATAATCGAGTGGTGCAAAATTAAAAGATAGTTTATCAAGAAAGCCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

mRNA sequence

ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

Coding sequence (CDS)

ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

Protein sequence

MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED*
Homology
[Close]
BLAST of Csa1G165220 vs. TrEMBL
Match: A0A0A0LVF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60
           MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE
Sbjct: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60

Query: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED
Sbjct: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]
BLAST of Csa1G165220 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1 

Query: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79

Query: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 101

[Close]
BLAST of Csa1G165220 vs. TrEMBL
Match: A0A0A0KCZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76

[Close]
BLAST of Csa1G165220 vs. NCBI nr
Match: gi|700209843|gb|KGN64939.1| (hypothetical protein Csa_1G165220 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60
           MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE
Sbjct: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60

Query: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED
Sbjct: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]
BLAST of Csa1G165220 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1 

Query: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79

Query: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 101

[Close]
BLAST of Csa1G165220 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 1 

Query: 16  QEQNVEKKSCCEEEDMDDQGA------SQAQQLSPLWTQR--------PSHRKKKYGIEQ 75
           +  N  +++  E E+ D + +      +  +QL     QR         S  +KK+ IE+
Sbjct: 13  EASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIER 72

Query: 76  VKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           +KA G   F+RT     A  WL  +EKCFRV++C E+RK++L+AFLL   AED
Sbjct: 73  LKALGSTTFARTTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAED 125

[Close]
BLAST of Csa1G165220 vs. NCBI nr
Match: gi|700191515|gb|KGN46719.1| (hypothetical protein Csa_6G127310 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-09
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76

[Close]
BLAST of Csa1G165220 vs. NCBI nr
Match: gi|659087174|ref|XP_008444312.1| (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 8.4e-09
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1 

Query: 27  EEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRAL 86
           + E   ++ A  AQ++S     RPS   K YGIEQ+K  G   F  + +   A  WL  L
Sbjct: 19  QNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDPADAEVWLNML 78

Query: 87  EKCFRVLQCLEERKIDLAAFLLHRKAE 114
           EKCF V+ C +E+K+ LA FLL ++AE
Sbjct: 79  EKCFDVMSCPQEQKVRLATFLLQKEAE 105

The following BLAST results are available for this feature:
BLAST of Csa1G165220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVF8_CUCSA1.8e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1[more]
A0A0A0LI31_CUCSA1.6e-1147.31Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
A0A0A0KCZ4_CUCSA4.5e-0950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1[more]
BLAST of Csa1G165220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209843|gb|KGN64939.1|2.6e-58100.00hypothetical protein Csa_1G165220 [Cucumis sativus][more]
gi|700206416|gb|KGN61535.1|2.4e-1147.31hypothetical protein Csa_2G163160 [Cucumis sativus][more]
gi|659068829|ref|XP_008446512.1|2.2e-0935.40PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|700191515|gb|KGN46719.1|6.4e-0950.00hypothetical protein Csa_6G127310 [Cucumis sativus][more]
gi|659087174|ref|XP_008444312.1|8.4e-0941.38PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G165220.1Csa1G165220.1mRNA