CSPI01G13800 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13800
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 9384516 .. 9390637 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGAAGCACCTCAAGGAAGAAGAATCAATGGAGGAAAGATGATATTATACTCCTTTTCTCTTACTTTTCTCAATTCTATCTATTAGATCAGCTCTCCAGCCAAGTTGCGTCAAGTATTTGAAAATACACCAGCTCTAATAGACATTGTCAAGTGGCTCATTTTTCTCCAGCCAAGTTGCCTCTTCAAAAATGCAATAAGCGCTCCGGTTTAAATAGACAATCTCAAGTGTGTGGCAAGATTGACTGAATGTATTATACTTACTATGTCCTCAAACAACATAGGCATTCACTCTCAAGCCTTCTCGTCAATTTACTCGTCCACTAATGTATGTCAATTTGATAGGTTCTTGTATTGTTTATACCATTGTGGGTGGACTTCTTTCTTTTGCGTTTGCTTCCTCCCTACCTTTATTTTTTGTCTCTTCTCTTTTATCTTTTCATAATCATTTTCTCAAATAAGAGAAAGATAAACAATATACACTTATTCAACTCCATGTCTTTTCAATCACTCTTCTTGTTCATTTCGTGAGCCAATTTGTTAGATCCAAGTTTTTGAGCTATTGATTTTTTTTTTTACTTTCGACTAAATTTAGAATTTGTTTGCATGATATTTGTGGGAATAATGTGAGCCTTGGTCATTTGCTATACTGATACGAGCTTCAAGGGAGTGTGCTTATCAAGCATGGGAAAGGCAGTATCAAGTTTGTGGCGTAGAAAGTTTAGAATGAAGAAGAAAAGGCTCACTGTATTTTGAAGAAGTCTAGGTCTTTAGTTTGAAACACTTAGAAAGTACAAAAATAGGCGAAATTAATTTGCTTATTGAGAAGGAGATGTCTATATGTAAATTGCTTATCAAGAAAAAGTTTTGCATCAAATTTGGGATGTTATCTGAATTCTAAAAGAAAGAAAGAATGAAAAAACAACCAGACCCGATATTTTTAACCCAACCCGAATTCAGGTGGGTCAAACTATCAGCAGTAAGACGACCCAGTGTTCCATATTTATCAAGGGATCATTTACCATTTTAATGATAACCATCTTCTCAACAAAATGAACATACATTTATCTACACTGAAATATATTTCCCACCTTATTTCAATAATTCCACTACCATATAGTTCCTTGCAACAAAAGAAAATCGATAGGGGAAACATAGTCACCGATGAAGGAAAAAAAAGATTAAATACTGGGAAGCATCTTTTGAAACCAACTAGGTCATTTTGTATCATGTTATAAGAAAGACTACTCTTAACCACGTTTGGCTTGAAACACACTTTCAAATTGAAAATTTTAAGTACATAACTTTCTCCATCAAATTTATTACGAAACTTCGCACTTATTTAAAGTTCAGTGTTTGGTTCTTAAAATTAATGAAAACAAACATTATTTCATGTTCGAAAGACACTAACGTTAGCTTGTATTAAAAGAAAGATAAGAGCACCCTTGCTGAATACTATTATCCAAAGTGATGTCAATGAGAATTTGGAAGGTTACATTCTTCACCTTATCCTTGCAGGTTGCACCTAGTGAAATGGTGGGAAAGTGGATCTTCACAATTGATCTGAAGAAAGCTAGGAGTACATAGAATTCTCTAGACTTTAAAATACTTAAGATCTTCAAGTTTAAGACGAGAAAACTAGATAGTTTAACACAATATAGGACTCCAAATCTTATTATTCCTCGTTTCCTTCGCAATAGTATACATGACAGGGACTTTATACCATCCTACGTCTACAAGGTAGGTTTATACAGTTTTTTCCTATCAGTTCGTAAGACCTTCCATTTAACATACTTACGAAGGGGTAAAAACAACCCTTCAAAGCTACTAGAGAAAATTAAGACACGAAGTCAGTTATTGAGAGTGAAAATCGTTGATAAGGTAAGGGTTTTCAAACGACAGACGAGGCAGAGATGTTTTAGGGTTAAACCATCAAACGAGATGGGAGTTTTCTTCTTGTTTCTCATCTTGTCTTAGCAGTTTCATAGAACTCTTGAATCATTACATTTCACAAACTCAATATAATCGTTCCCTATTTTGGACATATTTTTATAGTTTCTTCCTACTAATATTGGCTCTAGTGGCTAAAAAGAATATCTCACCCACAAAGATCCAAGAGAATAAGGTTAGAGATGATTTTATAATGGCTAAAAAAATTCAATGTTATAACTGCACATTAATCATTTTCAAGTTTGAATTTTCCACAAGTAAAAATAGAGGAGACTGGTCATTTCACATACGCTCTGTGTATATATGACAAGGGGAGAATCTTCCAACTAGAGATAACTCAATTGAATGCTTAACGACACTGAGAAGCAAAAAAAATGTGTTCCTCACTTGTCTATCTTTAATGGTGTAATTTCATTAGAAAAACTGAAGTTCGACTATCAATATGCGCATTAACAAGTTCCAATACGAAGGATTTATGGAATTTCGTTACTATGCCCATCTGATTAAGTAGGTTTTGAAGATCAGGAACTTCAAAAAGCTTTGCTGCAGATTTTGACAATTAGGAGCTTCAAATAACTTAAATGTAATCACTCAACTTATTCTAGTATTTATTTACTTCTAAATCCAATTTTTGTAACATCAAAATTGGTTTTGACCGATCAAAAGTGTAAATCAAAAGTATTTTAGAAAATGACAAAAGTAATTCAAACCAATTCAAAATCTGCCAAATGCAGTCTTCTTTAGACCTATTAAAGTAAAATAGCTGAGTCTAGACCAAACACAAGAGGAGAGGCCTCAAAATGTGATGCTCTAATATTTGAGCTACATATAGGGATATAGTTCAAATACCTCTCATCTCAACGAACACGTGGAAGGAAATTCTTTCTAGAATAGGAAAAAGTAGATGCAATCTAGTGTTCATCCTTTAAACTTCAATATAGTCATCAATGATGCACGGAATGGTACCACAAAACTTGAAAGATAATAAATCGAAAGGAAATGAGACTTTCAGCTTCTTACTTGATTAAAAGGTTTAGTATCAACCAATAAGAGAAGGACAAGAGAATGTAAAGGACCATACAAAACTTCATTACCAAATCAAACTATGTGATCATAGTAAACGATGACCTGTATCTGTGAGAAGCTCAAGACAAAATTTTATCATACAACTTGGAGTTGTGAAGTTCAAATGCAAAGTTGAATTGACTTGTGGATGTGGCTAAACTTTCTTGATAAGAATTTGATTGCAAGCTAAAGAAGAAAAGTGGACTACTGAAGTATTTAATGCCTTCATTGCTTTTTCCAAGAAGAAAAGGCTAATAATGTTAAGTTTACCCATAGTTTCTATAGAAGACAAGTTGAAGACAACTTTTTCGTACTTCAATAAGGAGATTTAATTTTTCTTTTCTTTTCCTTTCTTCTTTTTGTTCAACGAAGTTTGAGGCATTGATTTGCTTCCACAATATTTGTTTTTTTACATCAATTTTATTTATCTTAACAGTGTATCACAGAGCTACCTTGAATTTTCCAATCTCATTAGTTCGAGTTGAAGCAGCTTTATTAAAGGAATTGTTAGTTTGGGCTGGGAGCAATTTTGAGCGATTTTTTCTGGTAGTAAAATAAAACTTTTGGTTTGTTGGCAATTAGTACAAGGTGGTCTTGGTATTGGACCAATCAGTACAAACATATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAATATATCTACAATTTCAAAGATGTTTGTGTTGATAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACGATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTCTTAGGCTTAATCTGGATATCTATGAAAGCTTTGACAGCTGAAGGGACATGAAGCACTATATGGAAATATGTGAACTAGAGTGATAAATAGATTTCCTTGGGTAATCGAAAAGAGAGAAAGATAACACAAAACAATTTCTACAACAAGAATAAGAGTGGGTCAGTGGCACCGATCACGTTACTACAGCCATTGCATATACCAAATCAGGCTGGGAGGACATGCTCGTGACTGAAGGTTTACCAAAATCAAAGGTACAATGATGGTTGTGAATAGATTGAGCAAATACGGACATTTTATTCCTTTGAGTCATCCATATGGGGCTAAGAGTGGTGAAAGTCCTCATTACTAAAATTGTACAATTACATGGATTTTTTAGGACCATAATTTTCTTTTCTAGAAACAAGATTTTTGGTAGTAGTCTTTTTGGTGGAATTTTGTTTCTTCCATGGCACTGTACCCAAGAGAAGCACAGCCTTCCATCAAATAGATGGACAGATATACAGGGCAAATCGTTGTGTCGAGTCGTATTTCAGATGCTACTACATTGAGTAACAAAAACAGTGGAGAATATTGGTACAACACTGCTTCACATATTTTAATTAAAACACCTCCATTCAACATAATGCACACCCATCCAGCTCGAGCGACAATTTCATACGAGGATGGAAAAACTTCTAGTGATAGATTGAAAAGCATAATGGATTAAACGAGACTGAGCCTTCGTGGCTTTGTATAAGGCATACACAACATGCTGGAAAAGGTGGGAGCTGTTGCCTAAAAGCTGGACTTTCCTATAAGTCATCCTCTTAATGTTCAATGGTACCTAAAAGCTGTGTCAGGACGCTGAACTATGAGATGATATAGAGAGCGAGGCTATTTGCAAGTTGTAGGCTGAGTTGAAGCAACAATTTCCATCCCTTGACCTTGACTAAAAAGTGAACTAATACCTAGGAGGGAATGAGAGGCCCACAAATATACACACATATAAGGAAGAAGTAGAAGGGGAATTTCAAATGAGGAAAATCGTCCAAGTGGAGTTTTATTAACTAGTTGAGACCATTTAGAAGAGGGGTTTATTAAAAGTGGTCTTCTGTTGAAGGGAGGGCATCGAATTTGCAATCAATACTGGCTTGGGGGACAGGAATTCCAGCCCTCCAGAGTTAGGGTGTACTAGGGTTCTTAATGGGTTTTTTGTTTATCCTTCTTGTTGATTTGATGGAGATTTATTAACAGTTTACAGGTGAAAGACTCCCCACCATTTCATTGCTACTGCTAACCCTTGCGGGTTCTTTAGGCTCTAACCAATTGAAAATTCAAACAAAACCTATCATTCATTAGGGTTCTTCAGGCACAGGAAGATTGTGGCATAAACAACTTTGTGTGTTCAATCTAAATAGCTTGTAAACTTGTTTTGTGTCAGAGTCTATATTCCTTTTTAAATCATGGGTTCTTCTGGCTCTTGTTTTACTTCTCTCTCATGCCTCTTGTTTTGTTTCTCTTCTTCGAGCCATTGAAGAGCCCAAAAATCTTCTACCTTTTCATCAACCTATTTAAAAATTGTTTCTATGACACATATATCAAAGTAAAAGCTCTAGAAAGATTGAAACTTGCAAATTTTAAGAGAAAAAATTGGCAATCGAACAGTACAATCCAAAACAAGTATGATTTTACTTCTCCTACAACATAAGACCAATCAAAACACTTCAGATCTCTGGCATGTAACATGAAGGAGAAAGGCTAACAACAGTACTATTACTACAAGATGCAAGTTGTCTGATGTGAAGATTTCCATGGGAATTTCAAAACATGGTTCAAGTAAAAGAAGGAAAACAGAGAAGCTAAGCAACAGGAACTTCAAAGCATATTTAAGTTGTGTTGTGAAATTTAGAGGAGAACGAATTTAAGGAGCATTCAACTTAATATACTCACAGCATGTATTATAAGTGGGAATATAAGGTGAAAGGGCATAACAATTCAGTGTTAATTTCATCTCATAGACCTTGATCCAAAATGAGTTGACTGCTCAGAACTTTTGTGGAGAAGGAGAATGATGCACAGGATATCAATGCATCCTATGACCATGAATATCTCTGTAAGCCTGGAAGCAAGGATTAAGGCTAGGATACTTAAATGACCATAAAGAAGCTACCTAGACGTCTTAGAAAGGACACTGAAAAAGAGAGAAATTGACTGAAAACCCTGTAAAAGGATCGATGAAAGAGTAGTTCCAAAACAGTGACAAATAGT

mRNA sequence

ATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAATATATCTACAATTTCAAAGATGTTTGTGTTGATAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACGATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTCTTAGGCTTAATCTGGATATCTATGAAAGCTTTGACAGCTGA

Coding sequence (CDS)

ATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAATATATCTACAATTTCAAAGATGTTTGTGTTGATAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACGATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTCTTAGGCTTAATCTGGATATCTATGAAAGCTTTGACAGCTGA
Homology
[Close]
BLAST of CSPI01G13800 vs. TrEMBL
Match: A0A0A0LXX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126030 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-42
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLIVAVHVCNGRHIMFWKKPSSNQIND 60
          MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVL+VAVHVCNGRHIMFWKKPSSNQIN+
Sbjct: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60

Query: 61 FMKLGFLMTFAEVKLSSVPLRLNLDIYESFD 92
          FMKLGFLMTFAEVKLSSVP+RLNLDIYESFD
Sbjct: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFD 91

[Close]
BLAST of CSPI01G13800 vs. NCBI nr
Match: gi|700209745|gb|KGN64841.1| (hypothetical protein Csa_1G126030 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLIVAVHVCNGRHIMFWKKPSSNQIND 60
          MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVL+VAVHVCNGRHIMFWKKPSSNQIN+
Sbjct: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60

Query: 61 FMKLGFLMTFAEVKLSSVPLRLNLDIYESFD 92
          FMKLGFLMTFAEVKLSSVP+RLNLDIYESFD
Sbjct: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFD 91

The following BLAST results are available for this feature:
BLAST of CSPI01G13800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G13800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXX9_CUCSA7.2e-4296.70Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126030 PE=4 SV=1[more]
BLAST of CSPI01G13800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G13800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209745|gb|KGN64841.1|1.0e-4196.70hypothetical protein Csa_1G126030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13800.1CSPI01G13800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G13800Csa1G126030Cucumber (Chinese Long) v2cpicuB000
CSPI01G13800CsaV3_1G014000Cucumber (Chinese Long) v3cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G13800Watermelon (97103) v2cpiwmbB002
CSPI01G13800Wax gourdcpiwgoB017
CSPI01G13800Wax gourdcpiwgoB049
CSPI01G13800Cucumber (Gy14) v1cgycpiB326
CSPI01G13800Cucurbita maxima (Rimu)cmacpiB205
CSPI01G13800Cucurbita moschata (Rifu)cmocpiB192
CSPI01G13800Melon (DHL92) v3.5.1cpimeB011
CSPI01G13800Watermelon (Charleston Gray)cpiwcgB017
CSPI01G13800Watermelon (97103) v1cpiwmB057
CSPI01G13800Cucurbita pepo (Zucchini)cpecpiB518
CSPI01G13800Bottle gourd (USVL1VR-Ls)cpilsiB046
CSPI01G13800Melon (DHL92) v3.6.1cpimedB011
CSPI01G13800Cucumber (Gy14) v2cgybcpiB001
CSPI01G13800Silver-seed gourdcarcpiB0192