Csa1G126030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G126030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9307746 .. 9308437 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTTCCTTTCTTCTTTTTGTTCAACGAAGTTTGAGGCATTGATTTGCTTCCACAATATTTGTTTTTTTACATCAATTTTATTTATCTTAACAGTGTATCACAGAGCTACCTTGAATTTTCCAAACTCATTAGTTCGAGTTGAAGCAGCTTTATTAAAGGAATTGTTAGTTTGGGCTGCGAGCAATTTTGAGCGATTTTTTCTGGTAGTAAAATAAAACTTTTGGTTTGTTGGCAATTAGTACAAGGTGGTCTTGGTATTGGACCAATCAGTACAAACATATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAACATATCTACAATTTCAAAGATGTTTGTGTTGGTAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACAATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTATTAGGCTTAATCTGGATATCTATGAAAGCTTTGACGGCTGAAGGGACATGAAGCACTATATGGAAATATGTGAACTATAGTGATAAATAGATTTCCTTGGGTAATCGAAAAGAGAGAAAGATAACACAAAACAAGCATTAGACAAATAACCATTATTTCTACAACAAGAATAA

mRNA sequence

ATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAACATATCTACAATTTCAAAGATGTTTGTGTTGGTAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACAATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTATTAGGCTTAATCTGGATATCTATGAAAGCTTTGACGGCTGA

Coding sequence (CDS)

ATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAACATATCTACAATTTCAAAGATGTTTGTGTTGGTAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACAATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTATTAGGCTTAATCTGGATATCTATGAAAGCTTTGACGGCTGA

Protein sequence

MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINNFMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG*
Homology
[Close]
BLAST of Csa1G126030 vs. TrEMBL
Match: A0A0A0LXX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126030 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.5e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60
          MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN
Sbjct: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60

Query: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 93
          FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG
Sbjct: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 92

[Close]
BLAST of Csa1G126030 vs. NCBI nr
Match: gi|700209745|gb|KGN64841.1| (hypothetical protein Csa_1G126030 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.0e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60
          MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN
Sbjct: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60

Query: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 93
          FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG
Sbjct: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 92

The following BLAST results are available for this feature:
BLAST of Csa1G126030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXX9_CUCSA3.5e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126030 PE=4 SV=1[more]
BLAST of Csa1G126030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209745|gb|KGN64841.1|5.0e-44100.00hypothetical protein Csa_1G126030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091947cucumber EST collection version 3.0transcribed_cluster
CU110192cucumber EST collection version 3.0transcribed_cluster
CU131018cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G126030.1Csa1G126030.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU131018CU131018transcribed_cluster
CU110192CU110192transcribed_cluster
CU091947CU091947transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G126030CSPI01G13800Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G126030Watermelon (97103) v2cuwmbB002
Csa1G126030Wax gourdcuwgoB016
Csa1G126030Wax gourdcuwgoB049
Csa1G126030Cucumber (Gy14) v1cgycuB313
Csa1G126030Cucurbita maxima (Rimu)cmacuB163
Csa1G126030Cucurbita maxima (Rimu)cmacuB203
Csa1G126030Cucurbita moschata (Rifu)cmocuB148
Csa1G126030Cucurbita moschata (Rifu)cmocuB188
Csa1G126030Melon (DHL92) v3.5.1cumeB015
Csa1G126030Watermelon (Charleston Gray)cuwcgB014
Csa1G126030Watermelon (97103) v1cuwmB054
Csa1G126030Cucurbita pepo (Zucchini)cpecuB516
Csa1G126030Bottle gourd (USVL1VR-Ls)culsiB044
Csa1G126030Cucumber (Gy14) v2cgybcuB001
Csa1G126030Melon (DHL92) v3.6.1cumedB010
Csa1G126030Silver-seed gourdcarcuB0185
Csa1G126030Silver-seed gourdcarcuB0360