CsaV3_1G014000 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014000
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 9460559 .. 9460837 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAACATATCTACAATTTCAAAGATGTTTGTGTTGGTAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACAATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTATTAGGCTTAATCTGGATATCTATGAAAGCTTTGACGGCTGA

mRNA sequence

ATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAACATATCTACAATTTCAAAGATGTTTGTGTTGGTAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACAATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTATTAGGCTTAATCTGGATATCTATGAAAGCTTTGACGGCTGA

Coding sequence (CDS)

ATGAATTTGGTTCTAATCGGTCAAACAAATTTAACAGGCACACTAAGAGCAATTAGCATTCGAGTCTGGGTTAACATATCTACAATTTCAAAGATGTTTGTGTTGGTAGTTGCAGTTCATGTCTGTAACGGCAGACACATTATGTTCTGGAAGAAACCTTCATCAAATCAGATAAACAATTTCATGAAACTTGGATTTCTGATGACCTTCGCAGAAGTTAAACTTTCAAGTGTCCCTATTAGGCTTAATCTGGATATCTATGAAAGCTTTGACGGCTGA

Protein sequence

MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINNFMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG

Homology

[Close]

BLAST of CsaV3_1G014000 vs. NCBI nr
Match: KGN64841.1 (hypothetical protein Csa_1G126030 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 3.7e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60
          MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN
Sbjct: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60

Query: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 93
          FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG
Sbjct: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 92

[Close]

BLAST of CsaV3_1G014000 vs. TrEMBL
Match: tr|A0A0A0LXX9|A0A0A0LXX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126030 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60
          MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN
Sbjct: 1  MNLVLIGQTNLTGTLRAISIRVWVNISTISKMFVLVVAVHVCNGRHIMFWKKPSSNQINN 60

Query: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 93
          FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG
Sbjct: 61 FMKLGFLMTFAEVKLSSVPIRLNLDIYESFDG 92

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014000 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64841.1	3.7e-43	100.00	hypothetical protein Csa_1G126030 [Cucumis sativus]	[more]

BLAST of CsaV3_1G014000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G014000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G014000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXX9\|A0A0A0LXX9_CUCSA	2.4e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126030 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014000.1	CsaV3_1G014000.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G014000	CSPI01G13800	Wild cucumber (PI 183967)	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G014000	Silver-seed gourd	carcucB0192
CsaV3_1G014000	Silver-seed gourd	carcucB0363
CsaV3_1G014000	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G014000	Cucumber (Gy14) v1	cgycucB331
CsaV3_1G014000	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G014000	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G014000	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G014000	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G014000	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G014000	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G014000	Watermelon (Charleston Gray)	cucwcgB016
CsaV3_1G014000	Watermelon (97103) v1	cucwmB060
CsaV3_1G014000	Watermelon (97103) v2	cucwmbB002
CsaV3_1G014000	Wax gourd	cucwgoB017
CsaV3_1G014000	Wax gourd	cucwgoB051