CSPI01G10380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6548047 .. 6548680 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGCTGGGGATCCAAAAGCGTGTCAGTGGATGTTCTGATAGTGAAATTGGAGGAAACGGTTAAGAAGCTGAAAAGAGTTAGCGGAAAAACTGCTGATTTGGTGAGCAGTGGTTCTTTGTTGGCTTGGTTTTTTTCTGCTTGCAATCAGCTCGAGGCTTGGACTAACGAGCTTTTGTCCACGTTAAACAAATTAAGCTTACCCAACCCCACATTATCACTTTTCAACGGAGAACTCATTTCCAAAAATACTCTAAACCGCCAACTTCTAAGGATACTGAAGCCCGTGGCAAGAAGAGGTCAACTAGCCTCGACGACACCACCCAAGAGGAGCCGAAAACCAAACGGTCACGAACCAACAACTCAGAGGAGGGTTCGAGCTCGGGTGGCTTTCGATTGGTTGATTTGATAGTGAAAGTGGAGGAAGTGGTTAAGAAGCTGAAAGGCGTGGACAGGAAAAAGGGTTTGGTGAGTGATCTATTGTTGGCTTCGTTGGTGTTTGCGCACACTGCTGATGGTACAACTGAAAAAATAACTTCAGTTCACGTCACCAGGGAAGTGAAGTTTCTATTAACTTCAGTTCTACTACTTCTAATGGTACAACTGCTGATGGTAATGAAGAGAAAAAATAA

mRNA sequence

ATGGAGGGCTGGGGATCCAAAAGCGTGTCAGTGGATGTTCTGATAGTGAAATTGGAGGAAACGGTTAAGAAGCTGAAAAGAGTTAGCGGAAAAACTGCTGATTTGGATACTGAAGCCCGTGGCAAGAAGAGGTCAACTAGCCTCGACGACACCACCCAAGAGGAGCCGAAAACCAAACGGTCACGAACCAACAACTCAGAGGAGGGTTCGAGCTCGGGTGGCTTTCGATTGGTTGATTTGATAGTGAAAGTGGAGGAAGTGGTTAAGAAGCTGAAAGGCGTGGACAGGAAAAAGGGTTTGGGAAGTGAAGTTTCTATTAACTTCAGTTCTACTACTTCTAATGGTACAACTGCTGATGGTAATGAAGAGAAAAAATAA

Coding sequence (CDS)

ATGGAGGGCTGGGGATCCAAAAGCGTGTCAGTGGATGTTCTGATAGTGAAATTGGAGGAAACGGTTAAGAAGCTGAAAAGAGTTAGCGGAAAAACTGCTGATTTGGATACTGAAGCCCGTGGCAAGAAGAGGTCAACTAGCCTCGACGACACCACCCAAGAGGAGCCGAAAACCAAACGGTCACGAACCAACAACTCAGAGGAGGGTTCGAGCTCGGGTGGCTTTCGATTGGTTGATTTGATAGTGAAAGTGGAGGAAGTGGTTAAGAAGCTGAAAGGCGTGGACAGGAAAAAGGGTTTGGGAAGTGAAGTTTCTATTAACTTCAGTTCTACTACTTCTAATGGTACAACTGCTGATGGTAATGAAGAGAAAAAATAA
Homology
[Close]
BLAST of CSPI01G10380 vs. TrEMBL
Match: A0A0A0LRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059740 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MEGWGSKSVSVDVLIVKLEETVKKLKRVSGKTADL 36
          MEGWGSKSVSVDVLIVKLEETVKKLK VSGKTADL
Sbjct: 1  MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADL 35

[Close]
BLAST of CSPI01G10380 vs. NCBI nr
Match: gi|700209399|gb|KGN64495.1| (hypothetical protein Csa_1G059740 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MEGWGSKSVSVDVLIVKLEETVKKLKRVSGKTADL 36
          MEGWGSKSVSVDVLIVKLEETVKKLK VSGKTADL
Sbjct: 1  MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADL 35

The following BLAST results are available for this feature:
BLAST of CSPI01G10380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRI0_CUCSA3.2e-0897.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059740 PE=4 SV=1[more]
BLAST of CSPI01G10380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209399|gb|KGN64495.1|4.6e-0897.14hypothetical protein Csa_1G059740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10380.1CSPI01G10380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G10380Csa1G059740Cucumber (Chinese Long) v2cpicuB000
CSPI01G10380CsaV3_1G010490Cucumber (Chinese Long) v3cpicucB001
CSPI01G10380CsGy1G010380Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G10380Silver-seed gourdcarcpiB0531
CSPI01G10380Silver-seed gourdcarcpiB0670
CSPI01G10380Silver-seed gourdcarcpiB0968
CSPI01G10380Silver-seed gourdcarcpiB1044
CSPI01G10380Cucumber (Chinese Long) v3cpicucB009
CSPI01G10380Cucumber (Chinese Long) v3cpicucB010
CSPI01G10380Cucumber (Chinese Long) v3cpicucB017
CSPI01G10380Cucumber (Chinese Long) v3cpicucB051
CSPI01G10380Watermelon (97103) v2cpiwmbB001
CSPI01G10380Watermelon (97103) v2cpiwmbB032
CSPI01G10380Watermelon (97103) v2cpiwmbB041
CSPI01G10380Wax gourdcpiwgoB033
CSPI01G10380Wax gourdcpiwgoB047
CSPI01G10380Wild cucumber (PI 183967)cpicpiB038
CSPI01G10380Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G10380Cucumber (Gy14) v1cgycpiB016
CSPI01G10380Cucumber (Gy14) v1cgycpiB090
CSPI01G10380Cucurbita maxima (Rimu)cmacpiB219
CSPI01G10380Cucurbita maxima (Rimu)cmacpiB401
CSPI01G10380Cucurbita maxima (Rimu)cmacpiB656
CSPI01G10380Cucurbita maxima (Rimu)cmacpiB865
CSPI01G10380Cucurbita moschata (Rifu)cmocpiB205
CSPI01G10380Cucurbita moschata (Rifu)cmocpiB383
CSPI01G10380Cucurbita moschata (Rifu)cmocpiB648
CSPI01G10380Cucurbita moschata (Rifu)cmocpiB845
CSPI01G10380Cucumber (Chinese Long) v2cpicuB013
CSPI01G10380Cucumber (Chinese Long) v2cpicuB044
CSPI01G10380Melon (DHL92) v3.5.1cpimeB024
CSPI01G10380Melon (DHL92) v3.5.1cpimeB036
CSPI01G10380Melon (DHL92) v3.5.1cpimeB086
CSPI01G10380Watermelon (Charleston Gray)cpiwcgB016
CSPI01G10380Watermelon (Charleston Gray)cpiwcgB038
CSPI01G10380Watermelon (97103) v1cpiwmB010
CSPI01G10380Watermelon (97103) v1cpiwmB043
CSPI01G10380Cucurbita pepo (Zucchini)cpecpiB050
CSPI01G10380Cucurbita pepo (Zucchini)cpecpiB474
CSPI01G10380Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G10380Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G10380Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G10380Bottle gourd (USVL1VR-Ls)cpilsiB030
CSPI01G10380Melon (DHL92) v3.6.1cpimedB020
CSPI01G10380Melon (DHL92) v3.6.1cpimedB023
CSPI01G10380Melon (DHL92) v3.6.1cpimedB076
CSPI01G10380Cucumber (Gy14) v2cgybcpiB247