CsaV3_1G010490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6535634 .. 6536002 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGCTGGGGATCCAAAAGCGTGTCAGTGGATGTTCTGATAGTGAAATTGGAGGAAACGGTTAAGAAGCTGAAAAGCGTTAGCGGAAAAACTGCTGATTTGGTGATCAGTGGTTCTTTATTGGCTTGGTTTTTTTCTGCTTGCAATCAGCTGGAGGCTTGGACTAACGAGCTTTTGTCCACATTAAACAAATTAAGCTTACCCAACCCCACATTATCACTTTTCAACGGAGAACTCATTTCCAAAAATAACCTCAATTCCATCTCTAAACCGCCAACTTCTAAGGATACTGAAGCCCGTGGCAAGAAGAGGTCAACTAGCCTCGACGACACCACCCAAGAGGAGCCGAAAACCAAACGGTCATGA

mRNA sequence

ATGGAGGGCTGGGGATCCAAAAGCGTGTCAGTGGATGTTCTGATAGTGAAATTGGAGGAAACGGTTAAGAAGCTGAAAAGCGTTAGCGGAAAAACTGCTGATTTGGTGATCAGTGGTTCTTTATTGGCTTGGTTTTTTTCTGCTTGCAATCAGCTGGAGGCTTGGACTAACGAGCTTTTGTCCACATTAAACAAATTAAGCTTACCCAACCCCACATTATCACTTTTCAACGGAGAACTCATTTCCAAAAATAACCTCAATTCCATCTCTAAACCGCCAACTTCTAAGGATACTGAAGCCCGTGGCAAGAAGAGGTCAACTAGCCTCGACGACACCACCCAAGAGGAGCCGAAAACCAAACGGTCATGA

Coding sequence (CDS)

ATGGAGGGCTGGGGATCCAAAAGCGTGTCAGTGGATGTTCTGATAGTGAAATTGGAGGAAACGGTTAAGAAGCTGAAAAGCGTTAGCGGAAAAACTGCTGATTTGGTGATCAGTGGTTCTTTATTGGCTTGGTTTTTTTCTGCTTGCAATCAGCTGGAGGCTTGGACTAACGAGCTTTTGTCCACATTAAACAAATTAAGCTTACCCAACCCCACATTATCACTTTTCAACGGAGAACTCATTTCCAAAAATAACCTCAATTCCATCTCTAAACCGCCAACTTCTAAGGATACTGAAGCCCGTGGCAAGAAGAGGTCAACTAGCCTCGACGACACCACCCAAGAGGAGCCGAAAACCAAACGGTCATGA

Protein sequence

MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELLSTLNKLSLPNPTLSLFNGELISKNNLNSISKPPTSKDTEARGKKRSTSLDDTTQEEPKTKRS
Homology
[Close]
BLAST of CsaV3_1G010490 vs. NCBI nr
Match: KGN64495.1 (hypothetical protein Csa_1G059740 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 2.0e-57
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL 60
           MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL
Sbjct: 1   MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL 60

Query: 61  STLNKLSLPNPTLSLFNGELISKNNLNSISKPPTSKDTEARGKKRSTSLDDTTQEEPKTK 120
           STLNKLSLPNPTLSLFNGELISKNNLNSISKPPTSKDTEARGKKRSTSLDDTTQEEPKTK
Sbjct: 61  STLNKLSLPNPTLSLFNGELISKNNLNSISKPPTSKDTEARGKKRSTSLDDTTQEEPKTK 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 122

[Close]
BLAST of CsaV3_1G010490 vs. NCBI nr
Match: XP_008440827.1 (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_008440836.1 PREDICTED: uncharacterized protein LOC103485133 isoform X2 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 4.7e-14
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL 60
          ME W S++VSV  LIVKLEETVKK+KSVSGK A   IS  LLAWF SA NQLEA TNE+ 
Sbjct: 12 MEDWSSRNVSVHFLIVKLEETVKKMKSVSGKKA---ISDCLLAWFSSAYNQLEARTNEVF 71

Query: 61 STLNKLSLPNPTLSLFNGELIS 83
          S LNKL LP     ++N  LI+
Sbjct: 72 SKLNKLPLPYIPAPIWNVGLIA 90

[Close]
BLAST of CsaV3_1G010490 vs. TrEMBL
Match: tr|A0A0A0LRI0|A0A0A0LRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059740 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-57
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL 60
           MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL
Sbjct: 1   MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL 60

Query: 61  STLNKLSLPNPTLSLFNGELISKNNLNSISKPPTSKDTEARGKKRSTSLDDTTQEEPKTK 120
           STLNKLSLPNPTLSLFNGELISKNNLNSISKPPTSKDTEARGKKRSTSLDDTTQEEPKTK
Sbjct: 61  STLNKLSLPNPTLSLFNGELISKNNLNSISKPPTSKDTEARGKKRSTSLDDTTQEEPKTK 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 122

[Close]
BLAST of CsaV3_1G010490 vs. TrEMBL
Match: tr|A0A1S3B2P2|A0A1S3B2P2_CUCME (uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485133 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MEGWGSKSVSVDVLIVKLEETVKKLKSVSGKTADLVISGSLLAWFFSACNQLEAWTNELL 60
          ME W S++VSV  LIVKLEETVKK+KSVSGK A   IS  LLAWF SA NQLEA TNE+ 
Sbjct: 12 MEDWSSRNVSVHFLIVKLEETVKKMKSVSGKKA---ISDCLLAWFSSAYNQLEARTNEVF 71

Query: 61 STLNKLSLPNPTLSLFNGELIS 83
          S LNKL LP     ++N  LI+
Sbjct: 72 SKLNKLPLPYIPAPIWNVGLIA 90

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64495.12.0e-57100.00hypothetical protein Csa_1G059740 [Cucumis sativus][more]
XP_008440827.14.7e-1463.41PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_00... [more]
BLAST of CsaV3_1G010490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010490 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRI0|A0A0A0LRI0_CUCSA1.3e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059740 PE=4 SV=1[more]
tr|A0A1S3B2P2|A0A1S3B2P2_CUCME3.1e-1463.41uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010490.1CsaV3_1G010490.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..122

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010490CSPI01G10380Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010490CsGy1G010380Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010490MELO3C002436Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010490MELO3C002436.2Melon (DHL92) v3.6.1cucmedB022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010490Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010490Silver-seed gourdcarcucB0529
CsaV3_1G010490Silver-seed gourdcarcucB0672
CsaV3_1G010490Silver-seed gourdcarcucB0969
CsaV3_1G010490Silver-seed gourdcarcucB1049
CsaV3_1G010490Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010490Cucumber (Gy14) v1cgycucB018
CsaV3_1G010490Cucumber (Gy14) v1cgycucB089
CsaV3_1G010490Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010490Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010490Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010490Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010490Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010490Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010490Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010490Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010490Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010490Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010490Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010490Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010490Wild cucumber (PI 183967)cpicucB009
CsaV3_1G010490Wild cucumber (PI 183967)cpicucB010
CsaV3_1G010490Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010490Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010490Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010490Bottle gourd (USVL1VR-Ls)cuclsiB029
CsaV3_1G010490Melon (DHL92) v3.5.1cucmeB035
CsaV3_1G010490Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010490Melon (DHL92) v3.6.1cucmedB032
CsaV3_1G010490Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010490Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010490Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010490Watermelon (97103) v1cucwmB013
CsaV3_1G010490Watermelon (97103) v1cucwmB050
CsaV3_1G010490Watermelon (97103) v2cucwmbB001
CsaV3_1G010490Watermelon (97103) v2cucwmbB030
CsaV3_1G010490Watermelon (97103) v2cucwmbB040
CsaV3_1G010490Wax gourdcucwgoB037