CSPI01G08860 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G08860
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 5547538 .. 5547839 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGGTTCACGAGGATAAAATATTGTCTCTAATCATATACTGCAGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGACAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGGGGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGA

mRNA sequence

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGACAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGGGGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGA

Coding sequence (CDS)

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGACAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGGGGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGA
Homology
[Close]
BLAST of CSPI01G08860 vs. TrEMBL
Match: A0A0A0LTM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G047420 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.8e-42
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1 

Query: 1  MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
          MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1  MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61 TEVIYCVYANRGVDGVVEAVMGMERG 87
           EVIYCVYANRGVD VVEAVMGMERG
Sbjct: 61 AEVIYCVYANRGVDEVVEAVMGMERG 86

[Close]
BLAST of CSPI01G08860 vs. NCBI nr
Match: gi|700209253|gb|KGN64349.1| (hypothetical protein Csa_1G047420 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1 

Query: 1  MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
          MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1  MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61 TEVIYCVYANRGVDGVVEAVMGMERG 87
           EVIYCVYANRGVD VVEAVMGMERG
Sbjct: 61 AEVIYCVYANRGVDEVVEAVMGMERG 86

The following BLAST results are available for this feature:
BLAST of CSPI01G08860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G08860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTM9_CUCSA8.8e-4297.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G047420 PE=4 SV=1[more]
BLAST of CSPI01G08860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G08860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209253|gb|KGN64349.1|1.3e-4197.67hypothetical protein Csa_1G047420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G08860.1CSPI01G08860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G08860Csa1G047420Cucumber (Chinese Long) v2cpicuB000
CSPI01G08860CsaV3_1G008890Cucumber (Chinese Long) v3cpicucB001
CSPI01G08860CsGy1G008800Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G08860Cucurbita moschata (Rifu)cmocpiB056
CSPI01G08860Cucurbita moschata (Rifu)cmocpiB383
CSPI01G08860Cucurbita moschata (Rifu)cmocpiB398
CSPI01G08860Cucumber (Chinese Long) v2cpicuB007
CSPI01G08860Cucumber (Chinese Long) v2cpicuB017
CSPI01G08860Melon (DHL92) v3.5.1cpimeB024
CSPI01G08860Melon (DHL92) v3.5.1cpimeB047
CSPI01G08860Melon (DHL92) v3.5.1cpimeB064
CSPI01G08860Watermelon (Charleston Gray)cpiwcgB038
CSPI01G08860Watermelon (Charleston Gray)cpiwcgB063
CSPI01G08860Watermelon (Charleston Gray)cpiwcgB075
CSPI01G08860Watermelon (Charleston Gray)cpiwcgB094
CSPI01G08860Watermelon (97103) v1cpiwmB010
CSPI01G08860Watermelon (97103) v1cpiwmB036
CSPI01G08860Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G08860Bottle gourd (USVL1VR-Ls)cpilsiB050
CSPI01G08860Bottle gourd (USVL1VR-Ls)cpilsiB066
CSPI01G08860Bottle gourd (USVL1VR-Ls)cpilsiB083
CSPI01G08860Melon (DHL92) v3.6.1cpimedB023
CSPI01G08860Melon (DHL92) v3.6.1cpimedB041
CSPI01G08860Cucumber (Gy14) v2cgybcpiB052
CSPI01G08860Silver-seed gourdcarcpiB0531
CSPI01G08860Silver-seed gourdcarcpiB0654
CSPI01G08860Cucumber (Chinese Long) v3cpicucB022
CSPI01G08860Watermelon (97103) v2cpiwmbB032
CSPI01G08860Watermelon (97103) v2cpiwmbB059
CSPI01G08860Watermelon (97103) v2cpiwmbB072
CSPI01G08860Watermelon (97103) v2cpiwmbB088
CSPI01G08860Wax gourdcpiwgoB030
CSPI01G08860Wax gourdcpiwgoB069
CSPI01G08860Cucurbita maxima (Rimu)cmacpiB394
CSPI01G08860Wild cucumber (PI 183967)cpicpiB002
CSPI01G08860Wild cucumber (PI 183967)cpicpiB008
CSPI01G08860Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G08860Cucumber (Gy14) v1cgycpiB107
CSPI01G08860Cucumber (Gy14) v1cgycpiB312
CSPI01G08860Cucurbita maxima (Rimu)cmacpiB063
CSPI01G08860Cucurbita maxima (Rimu)cmacpiB103
CSPI01G08860Cucurbita maxima (Rimu)cmacpiB161
CSPI01G08860Cucurbita maxima (Rimu)cmacpiB410