Csa1G047420 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G047420
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 5517398 .. 5517898 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGGTTCACGAGGATAAAATATTGTCTCTAATCATATACTGCAGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGAAGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTGTAAATGACCAAACTCATTTGAAATTTTCCCACTCAACGTTTCACCTTATAAATTGTCCATCCATAGTGTCATGTTATTTTCTAAACTTCAAAGACTCAAACCAAATACTCAAATGCATTCAATTGA

mRNA sequence

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGAAGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTACTCAAACCAAATACTCAAATGCATTCAATTGA

Coding sequence (CDS)

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGAAGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTACTCAAACCAAATACTCAAATGCATTCAATTGA

Protein sequence

MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDMAEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAFN*

Homology

[Close]

BLAST of Csa1G047420 vs. TrEMBL
Match: A0A0A0LTM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G047420 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
           MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120
           AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF
Sbjct: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Csa1G047420 vs. NCBI nr
Match: gi|700209253|gb|KGN64349.1| (hypothetical protein Csa_1G047420 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
           MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120
           AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF
Sbjct: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120

Query: 121 N 122
           N
Sbjct: 121 N 121

The following BLAST results are available for this feature:

BLAST of Csa1G047420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM9_CUCSA	1.1e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G047420 PE=4 SV=1	[more]

BLAST of Csa1G047420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209253\|gb\|KGN64349.1\|	1.6e-63	100.00	hypothetical protein Csa_1G047420 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G047420.1	Csa1G047420.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G047420	CSPI01G08860	Wild cucumber (PI 183967)	cpicuB000
Csa1G047420	CsGy1G008800	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G047420	Watermelon (97103) v1	cuwmB000
Csa1G047420	Watermelon (97103) v1	cuwmB008
Csa1G047420	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G047420	Bottle gourd (USVL1VR-Ls)	culsiB085
Csa1G047420	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G047420	Bottle gourd (USVL1VR-Ls)	culsiB028
Csa1G047420	Melon (DHL92) v3.6.1	cumedB022
Csa1G047420	Silver-seed gourd	carcuB0523
Csa1G047420	Watermelon (97103) v2	cuwmbB032
Csa1G047420	Watermelon (97103) v2	cuwmbB087
Csa1G047420	Watermelon (97103) v2	cuwmbB088
Csa1G047420	Wax gourd	cuwgoB030
Csa1G047420	Cucumber (Chinese Long) v2	cucuB007
Csa1G047420	Cucumber (Gy14) v1	cgycuB106
Csa1G047420	Cucurbita maxima (Rimu)	cmacuB390
Csa1G047420	Cucurbita moschata (Rifu)	cmocuB380
Csa1G047420	Melon (DHL92) v3.5.1	cumeB027
Csa1G047420	Watermelon (Charleston Gray)	cuwcgB001
Csa1G047420	Watermelon (Charleston Gray)	cuwcgB035
Csa1G047420	Watermelon (Charleston Gray)	cuwcgB089