CsaV3_1G008890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G008890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5535188 .. 5535688 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGGTTCACGAGGATAAAATATTGTCTCTAATCATATACTGCAGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGAAGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTGTAAATGACCAAACTCATTTGAAATTTTCCCACTCAACGTTTCACCTTATAAATTGTCCATCCATAGTGTCATGTTATTTTCTAAACTTCAAAGACTCAAACCAAATACTCAAATGCATTCAATTGA

mRNA sequence

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGAAGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTACTCAAACCAAATACTCAAATGCATTCAATTGA

Coding sequence (CDS)

ATGCACGACCTCGCCTCCCTCCAGGCTCCACTCCTGCCCATCAGACCTTGCGACGGCGACGGCTTCGATGCTTTCACCAAATTTCGCGGCTCTGATTTCCGGGGATTAAATGATCAGGTCAGCAATTTCAGGGGATTGAAAAGTGGTGAGATTTTGAAATTTGGAGTAGGTGAAGACATGGCAGAAGTTATATATTGTGTGTATGCTAATAGAGGCGTTGACGAAGTTGTAGAAGCAGTGATGGGAATGGAGAGGGGCTGGGCCGGAGGAGAAAAGGGGAGGGAGGAGAGAAACAAGAAAATGAGAGAAAAAAATCCACGAAGTAAACTAATTACTCAAACCAAATACTCAAATGCATTCAATTGA

Protein sequence

MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDMAEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAFN
Homology
[Close]
BLAST of CsaV3_1G008890 vs. NCBI nr
Match: KGN64349.1 (hypothetical protein Csa_1G047420 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
           MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120
           AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF
Sbjct: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]
BLAST of CsaV3_1G008890 vs. TrEMBL
Match: tr|A0A0A0LTM9|A0A0A0LTM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G047420 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.1e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60
           MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM
Sbjct: 1   MHDLASLQAPLLPIRPCDGDGFDAFTKFRGSDFRGLNDQVSNFRGLKSGEILKFGVGEDM 60

Query: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120
           AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF
Sbjct: 61  AEVIYCVYANRGVDEVVEAVMGMERGWAGGEKGREERNKKMREKNPRSKLITQTKYSNAF 120

Query: 121 N 122
           N
Sbjct: 121 N 121

The following BLAST results are available for this feature:
BLAST of CsaV3_1G008890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64349.11.2e-62100.00hypothetical protein Csa_1G047420 [Cucumis sativus][more]
BLAST of CsaV3_1G008890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTM9|A0A0A0LTM9_CUCSA8.1e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G047420 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G008890.1CsaV3_1G008890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..109

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G008890CSPI01G08860Wild cucumber (PI 183967)cpicucB001
CsaV3_1G008890CsGy1G008800Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G008890Cucumber (Chinese Long) v3cuccucB002
CsaV3_1G008890Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G008890Silver-seed gourdcarcucB0529
CsaV3_1G008890Silver-seed gourdcarcucB0655
CsaV3_1G008890Cucumber (Gy14) v2cgybcucB009
CsaV3_1G008890Cucumber (Gy14) v1cgycucB109
CsaV3_1G008890Cucumber (Gy14) v1cgycucB316
CsaV3_1G008890Cucumber (Gy14) v1cgycucB595
CsaV3_1G008890Cucurbita maxima (Rimu)cmacucB0074
CsaV3_1G008890Cucurbita maxima (Rimu)cmacucB0121
CsaV3_1G008890Cucurbita maxima (Rimu)cmacucB0186
CsaV3_1G008890Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G008890Cucurbita maxima (Rimu)cmacucB0484
CsaV3_1G008890Cucurbita moschata (Rifu)cmocucB0061
CsaV3_1G008890Cucurbita moschata (Rifu)cmocucB0105
CsaV3_1G008890Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G008890Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G008890Cucurbita pepo (Zucchini)cpecucB0435
CsaV3_1G008890Cucurbita pepo (Zucchini)cpecucB0801
CsaV3_1G008890Wild cucumber (PI 183967)cpicucB013
CsaV3_1G008890Wild cucumber (PI 183967)cpicucB074
CsaV3_1G008890Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G008890Bottle gourd (USVL1VR-Ls)cuclsiB057
CsaV3_1G008890Bottle gourd (USVL1VR-Ls)cuclsiB075
CsaV3_1G008890Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G008890Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G008890Melon (DHL92) v3.5.1cucmeB047
CsaV3_1G008890Melon (DHL92) v3.5.1cucmeB066
CsaV3_1G008890Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G008890Melon (DHL92) v3.6.1cucmedB044
CsaV3_1G008890Melon (DHL92) v3.6.1cucmedB062
CsaV3_1G008890Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G008890Watermelon (Charleston Gray)cucwcgB067
CsaV3_1G008890Watermelon (Charleston Gray)cucwcgB079
CsaV3_1G008890Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G008890Watermelon (97103) v1cucwmB013
CsaV3_1G008890Watermelon (97103) v1cucwmB041
CsaV3_1G008890Watermelon (97103) v2cucwmbB030
CsaV3_1G008890Watermelon (97103) v2cucwmbB068
CsaV3_1G008890Watermelon (97103) v2cucwmbB056
CsaV3_1G008890Watermelon (97103) v2cucwmbB088
CsaV3_1G008890Wax gourdcucwgoB033
CsaV3_1G008890Wax gourdcucwgoB073