CSPI01G07670 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G07670
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 4869542 .. 4870780 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATAGCCGACGGAGGAGAAAAACCGAGCAGGCAGAGAGGAGGGGTCGACGATAAGTGGAAGAAGCAGAACCCGCGTAGGGTTTTTCTTTTTTCCCTTTTCTTAATCTACTTAGACAACTTTTACCCTCAACTTTTAACTTCGTTAAAATTACTTTTTACTTGGGAACTTTTTCAAATTCTACCTTAATAGTAATGAATTTTTTACCTTCAAATAGTATTTCTCATTGTTGTTGCACAAATCCATGTAATATCGTGCCACACTAATATTTAAGTAAGCAAGTATAACCATGTTGAAAAATGTAAAACCAATCCTAACAAAAATTTATTGGCTAAGTATTTCATATGATTTCAATCATTATTTTTTTTATTAGAATTCGTTTGCATTTCTATTTAAGTTTCTTATTTCTTTTCATTCCATTTGTCAATATAACTTTTTAATACGGTAAAGATGAGGGATCAAACATTCCACTTCTAGAATGAAAGATCATGTCAATTATTGTTGAACAAATTTTACTTTTGTATTGACTATGTATTTAAAACTGATAGTTGACTAGTACCGTTAAACTTGTTATGCAACAACAATGATATGTCAATGATAGCCATGTCACGTATAGAATCCTAAAAATTGAAGTTTACCGTAGATATTATTACAATTGTCACAATTAAATGAAGGAAAACAAATTACATTCACTTTTTTTTATCATGAAACATCATCAAATATAATAAAATGAACAAAAGATGTTTACAAAATAGAACCTAGTGAAATTTTACTCTACCTTGAACATTTTAAGCAATTTTACAATTTACATTTATTATTTTGCACTTTTTTCTATAATATTCTCATCACTTCTATTATATCACCAAATTGGTTTCTAAAAAGCAGAATTTGAAATAGAAAATGGGCCTTGGACCTTGGGCCTAATTAGTGTATTGCATAACGGATCAGGCAAATGGGCCACAACATCGGAAACAGGTAAGACGAAAGGAAGGAAAGAAAATGGGGGAAATGCATCAAACGCTGGATAACTTCGGAATGTATCTACACTGTATATCTACACATCGTCCGAAACGGAACAGCTCCAAAACGTCCAAACAAATCCAAAGCAAGGGAAAAGATAAGAGAGTGTGA

mRNA sequence

ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATAGCCGACGGAGGAGAAAAACCGAGCAGGCAGAGAGGAGGGGTCGACGATAAGTGGAAGAAGCAGAACCCGCGTAGGGCAAATGGGCCACAACATCGGAAACAGGTAAGACGAAAGGAAGGAAAGAAAATGGGGGAAATGCATCAAACGCTGGATAACTTCGGAATGTATCTACACTGTATATCTACACATCGTCCGAAACGGAACAGCTCCAAAACGTCCAAACAAATCCAAAGCAAGGGAAAAGATAAGAGAGTGTGA

Coding sequence (CDS)

ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATAGCCGACGGAGGAGAAAAACCGAGCAGGCAGAGAGGAGGGGTCGACGATAAGTGGAAGAAGCAGAACCCGCGTAGGGCAAATGGGCCACAACATCGGAAACAGGTAAGACGAAAGGAAGGAAAGAAAATGGGGGAAATGCATCAAACGCTGGATAACTTCGGAATGTATCTACACTGTATATCTACACATCGTCCGAAACGGAACAGCTCCAAAACGTCCAAACAAATCCAAAGCAAGGGAAAAGATAAGAGAGTGTGA
Homology
[Close]
BLAST of CSPI01G07670 vs. TrEMBL
Match: A0A0A0LW09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043285 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRQRGGVDDKWKKQN 60
          MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSR+RGGVDDKWKKQN
Sbjct: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60

Query: 61 PRR 64
          PRR
Sbjct: 61 PRR 63

[Close]
BLAST of CSPI01G07670 vs. NCBI nr
Match: gi|700209130|gb|KGN64226.1| (hypothetical protein Csa_1G043285 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.2e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRQRGGVDDKWKKQN 60
          MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSR+RGGVDDKWKKQN
Sbjct: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60

Query: 61 PRR 64
          PRR
Sbjct: 61 PRR 63

The following BLAST results are available for this feature:
BLAST of CSPI01G07670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G07670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW09_CUCSA4.3e-2698.41Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043285 PE=4 SV=1[more]
BLAST of CSPI01G07670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G07670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209130|gb|KGN64226.1|6.2e-2698.41hypothetical protein Csa_1G043285 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G07670.1CSPI01G07670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G07670CsaV3_1G007640Cucumber (Chinese Long) v3cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G07670Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G07670Melon (DHL92) v3.6.1cpimedB023
CSPI01G07670Cucumber (Gy14) v2cgybcpiB001
CSPI01G07670Silver-seed gourdcarcpiB0531
CSPI01G07670Watermelon (97103) v2cpiwmbB010
CSPI01G07670Wax gourdcpiwgoB028
CSPI01G07670Cucurbita maxima (Rimu)cmacpiB394
CSPI01G07670Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G07670Cucumber (Gy14) v1cgycpiB160
CSPI01G07670Cucurbita maxima (Rimu)cmacpiB218
CSPI01G07670Cucurbita moschata (Rifu)cmocpiB204
CSPI01G07670Cucurbita moschata (Rifu)cmocpiB383
CSPI01G07670Cucumber (Chinese Long) v2cpicuB000
CSPI01G07670Melon (DHL92) v3.5.1cpimeB024
CSPI01G07670Watermelon (Charleston Gray)cpiwcgB024
CSPI01G07670Watermelon (97103) v1cpiwmB042
CSPI01G07670Cucurbita pepo (Zucchini)cpecpiB505